Click here to switch to the map view.

The map label for this gene is ubiD [H]

Identifier: 192289428

GI number: 192289428

Start: 1063767

End: 1065305

Strand: Reverse

Name: ubiD [H]

Synonym: Rpal_1001

Alternate gene names: 192289428

Gene position: 1065305-1063767 (Counterclockwise)

Preceding gene: 192289432

Following gene: 192289427

Centisome position: 18.55

GC content: 65.43

Gene sequence:

>1539_bases
ATGCTGAGCCGCGTCAAACCGCCCTTCCCTGATCTGCGTGCATTTAGTGGCTATCTCGAATCACGCGGACAGTTGCACCG
CATCCGCAAGCCGGTGTCGGTGGTCCATGACCTCACAGAAATCCATCGCCGCGTGCTGCATGCCGGTGGCCCGGCACTCC
TGATCGAAAACCCGATCAAGGCCGACGGCACGCCGTCCGAGATGCCGATCCTGGTCAATCTGTTCGGCACCGTCGAACGG
GTGGCCTGGGGCCTCGGCATTTTGCCGGAGAATCTATCGCGGCTCGGCGAGGCGCTCGCCGAAATGCGAGAGCCGGCACC
GCCGCAGAGCCTGACCGACGCTTTGAGCAAGCTGCCGATGGCCAAGGCCGCGCTGGCGATGCGGCCGAAGCTGGCGAAAT
CGGCGCCGGTGCAGGAAGTGGTGCTGACCGGCGACGCGGTCGATCTCGGTCGGCTGCCGGTGCAGATCCCCTGGCCCGGA
GAACCGGCACCGCTGATCACCTGGGGCCTCGTCTTCACCAAGCCGCCGCCCGGCGCGCACGGCACCGACAATGTCGGCGT
CTACCGGATGCAGGTGCTGGGCAAGGATCGCCTGATCATGCGCTGGCTGGCGCATCGCGGCGGAGCCAAGCACCACCACC
AGTGGAAGGCCGACAAGCGCGAGATGCCGGTCGCGATCGTGATCGGCGCCGATCCGTCGATGATTCTCTCGGCGGTGCTG
CCGCTGCCGGAGACGGTGTCGGAGATCAAATTCGCCGGCCTGCTCGGCGGCGAGCGTCCGAGCCTGACGCCGTGCCAGAC
CATTCCGATCAGCGTGCCAGCCGATGCCGAGATCGTGCTGGAAGGCTTCGTGTCACCGACCGAGACCGCGCCGGAGGGGC
CGTATGGCGACCACACCGGCTATTACAACGCGGTCGAGGAATTCCCGGTGATGCGGATCACCGCGATCACCATGCGCCGG
CATCCGATTTATCTGTCGACCTATACGGGACGGCCGCCGGATGAGCCATCGCGACTTGGCGAGGCGTTCAACGACGTGTT
TCTTCCGGTCGCGCGGCGGCAATTCCCCGAGATCGTCGATCTGTGGCTGCCGCCGGAAGCGTGTTCCTATCGGATCGCCG
TCGCCTCGATCAAGAAACGCTATCCCGGCCAGGCGCGCCGGCTGATGATGGGGCTGTGGTCGATGCTGCCGCAGTTCAGC
TACACCAAGCTCCTGATCATCGTCGACGACGACGTCGATGTCCGCGACTGGGCCGACGTGATGTGGGCGGTGTCGACACG
CTGCGACACCTCGCGCGACATGGTGTCGATCAGCGACACCCCGATCGATTATCTCGACTTCGCCTCGCCGAAATCCGGAC
TCGGCGGTAAGCTCGGCATCGACGCCACCAACAAGATCGGCACCGAGACCGAGCGCGAGTGGGGCAAGGTGCTGGAGATG
GACAAGGACGTGATTGCACGGGTCGATGCGATGTGGACCAGCCTCGGACTGTCGCCGGAACATCAACCGGCGGCCGGGCA
ACGCCGGCTGATCCGATGA

Upstream 100 bases:

>100_bases
GAACAGTTCGCGTAGCCCGGCCCCGACGGTACTTCTTTGCGCCTGATCAAAGACAGGGTCGATGGCAAGTGCTGACCAGT
GTTGTCCGCAGGGAGACACC

Downstream 100 bases:

>100_bases
GCACGCAGCACCGCATCGTGGTCGGCATCAGCGGCGCCTCGGGCGCCGCGGTGGGGCTGCGGGTGGTCGAACTGCTGGCC
TCGGTCGATTGCGAAGTGCA

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MLSRVKPPFPDLRAFSGYLESRGQLHRIRKPVSVVHDLTEIHRRVLHAGGPALLIENPIKADGTPSEMPILVNLFGTVER
VAWGLGILPENLSRLGEALAEMREPAPPQSLTDALSKLPMAKAALAMRPKLAKSAPVQEVVLTGDAVDLGRLPVQIPWPG
EPAPLITWGLVFTKPPPGAHGTDNVGVYRMQVLGKDRLIMRWLAHRGGAKHHHQWKADKREMPVAIVIGADPSMILSAVL
PLPETVSEIKFAGLLGGERPSLTPCQTIPISVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
HPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRCDTSRDMVSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWTSLGLSPEHQPAAGQRRLIR

Sequences:

>Translated_512_residues
MLSRVKPPFPDLRAFSGYLESRGQLHRIRKPVSVVHDLTEIHRRVLHAGGPALLIENPIKADGTPSEMPILVNLFGTVER
VAWGLGILPENLSRLGEALAEMREPAPPQSLTDALSKLPMAKAALAMRPKLAKSAPVQEVVLTGDAVDLGRLPVQIPWPG
EPAPLITWGLVFTKPPPGAHGTDNVGVYRMQVLGKDRLIMRWLAHRGGAKHHHQWKADKREMPVAIVIGADPSMILSAVL
PLPETVSEIKFAGLLGGERPSLTPCQTIPISVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
HPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRCDTSRDMVSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWTSLGLSPEHQPAAGQRRLIR
>Mature_512_residues
MLSRVKPPFPDLRAFSGYLESRGQLHRIRKPVSVVHDLTEIHRRVLHAGGPALLIENPIKADGTPSEMPILVNLFGTVER
VAWGLGILPENLSRLGEALAEMREPAPPQSLTDALSKLPMAKAALAMRPKLAKSAPVQEVVLTGDAVDLGRLPVQIPWPG
EPAPLITWGLVFTKPPPGAHGTDNVGVYRMQVLGKDRLIMRWLAHRGGAKHHHQWKADKREMPVAIVIGADPSMILSAVL
PLPETVSEIKFAGLLGGERPSLTPCQTIPISVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
HPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRCDTSRDMVSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWTSLGLSPEHQPAAGQRRLIR

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=494, Percent_Identity=53.6437246963563, Blast_Score=537, Evalue=1e-154,
Organism=Saccharomyces cerevisiae, GI6320748, Length=452, Percent_Identity=23.8938053097345, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56488; Mature: 56488

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRVKPPFPDLRAFSGYLESRGQLHRIRKPVSVVHDLTEIHRRVLHAGGPALLIENPIK
CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
ADGTPSEMPILVNLFGTVERVAWGLGILPENLSRLGEALAEMREPAPPQSLTDALSKLPM
CCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCH
AKAALAMRPKLAKSAPVQEVVLTGDAVDLGRLPVQIPWPGEPAPLITWGLVFTKPPPGAH
HHHHHHHCCHHHHCCCHHHEEEECCCEECCCCCEECCCCCCCCCEEEEEEEEECCCCCCC
GTDNVGVYRMQVLGKDRLIMRWLAHRGGAKHHHQWKADKREMPVAIVIGADPSMILSAVL
CCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHC
PLPETVSEIKFAGLLGGERPSLTPCQTIPISVPADAEIVLEGFVSPTETAPEGPYGDHTG
CCHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCHHHHHCCCCCCCCCCCCCCCCCCCC
YYNAVEEFPVMRITAITMRRHPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVD
HHHHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHH
LWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFSYTKLLIIVDDDVDVRDWADV
HCCCCHHHCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
MWAVSTRCDTSRDMVSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
HHHHHHCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHC
DKDVIARVDAMWTSLGLSPEHQPAAGQRRLIR
CHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MLSRVKPPFPDLRAFSGYLESRGQLHRIRKPVSVVHDLTEIHRRVLHAGGPALLIENPIK
CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
ADGTPSEMPILVNLFGTVERVAWGLGILPENLSRLGEALAEMREPAPPQSLTDALSKLPM
CCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCH
AKAALAMRPKLAKSAPVQEVVLTGDAVDLGRLPVQIPWPGEPAPLITWGLVFTKPPPGAH
HHHHHHHCCHHHHCCCHHHEEEECCCEECCCCCEECCCCCCCCCEEEEEEEEECCCCCCC
GTDNVGVYRMQVLGKDRLIMRWLAHRGGAKHHHQWKADKREMPVAIVIGADPSMILSAVL
CCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHC
PLPETVSEIKFAGLLGGERPSLTPCQTIPISVPADAEIVLEGFVSPTETAPEGPYGDHTG
CCHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCHHHHHCCCCCCCCCCCCCCCCCCCC
YYNAVEEFPVMRITAITMRRHPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVD
HHHHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHH
LWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFSYTKLLIIVDDDVDVRDWADV
HCCCCHHHCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
MWAVSTRCDTSRDMVSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
HHHHHHCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHC
DKDVIARVDAMWTSLGLSPEHQPAAGQRRLIR
CHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]