Click here to switch to the map view.

The map label for this gene is 192289390

Identifier: 192289390

GI number: 192289390

Start: 1027700

End: 1029184

Strand: Reverse

Name: 192289390

Synonym: Rpal_0962

Alternate gene names: NA

Gene position: 1029184-1027700 (Counterclockwise)

Preceding gene: 192289391

Following gene: 192289386

Centisome position: 17.92

GC content: 47.54

Gene sequence:

>1485_bases
ATGCTCGCTCAACAATTTATTTCGGAAGATCAACCACGAACTCTATTCCCGAATCGTGCAACCCAGCTGCTCATCTCAGC
AGGAGAAGACCTAATTAAGCAGCACATCGAAAAGTGTTTCGACAAGAAAGACGGCGCCTACTCTTTTCTACCGCAACAGC
GGGTTCACGCCACAAAGCAGGGAGGCAATCTGCGCCGAACATTCAAACTCGATCCGGTTGCGGAATACTACATCTACAGC
ACGGTTCATTCAAATCGGGCGCGATTTCGAAAGCCACACCAAGAGTCGCGCTCTCATTTTGGCTATCGTTTCGAATGTGG
GGCCTACTTAAATCCGAGTCTCGCTTATCAGGGATTCCGAACCGCAATTTCGAAATACATGAACCAATATAAATATTTCA
TTAGTTTCGACGTCGCATCCTATTTTAACAGTGTGTACCATCACGACCTGGCTGGATGGTTTCTCAACTTAGGCGTTTCG
ACTGCCGAGTATGAGCGATTCGGTCAGTATTTTCGCGAAATCAATGCTGGACGCTCCGTAGATATTCTTCCACAAGGAAT
TTACCCCACCAAGGTCATAGGCAACGACTTCTTGCGCTTCGTCGACAATCATCACGCACTAAAATGCAAACAGCTTTTGC
GCTTCATGGATGACTTCTATCTTTTCTCGGACAATGCGGCGGACATCAGAAGCGACTTCCTATTAGTTCAAAGGCTGCTT
GGTGAAAAATCGTTAAACCTAAATACGGGGAAAACGAGCCGGGTTACAGCGAGCCACACTCAGATTGCTGCAGACATCGA
CAAGGTGAAGAAGGATCTTCTCGACCGCCGACGAATCGAGGTGACGGTCGGTGGCTATGACGGCGAACCGGACGAGACAG
TCAATATCACGCTAAGGACACCGCTCTCTGAGAAGGAGATGAATTACATCTTGAAATTATTGGCGCAAGAAACACTGGAA
GAAGAGGACGCCGAACTAATTCTTACCGTCATGAAAGACCACGCCATTAAGGCCGAACGCAAATTGGAATATATCATCAA
GGAATTTCCAAATCTGATGAAATCGGTCTTCAATTTTTGCGGCAGGATCGACGACCGCGAATTTGTTGCAGATCTTCTCC
TTAAGCTTCTCGGCTCAAATGAGCTCCAGGAATACCAACTGTTCTGGTTCGGACACATACTCGAGAGCTACCTTCTAAAA
ACAGGGAAAGCATCGGCTCTAATCGACGGGATATACAACCACCCGATGGCAACTACGATCTCAAAGGCGAAGATCCTTGA
AATCGCTGATCAACGATTTGGGCTTTCCGAACTTCGAGACCCTATACTTAAAAGTGGACAATCTGACTGGCTGTCATGGT
CGGCGGCAGTTGGTGAACGATGTCAGCCCTCCCCCATCAGAAATCACCGACTCGCCTACTTTGCCAAAGGCTCTCCAATG
AACCACTTGGTTTCAACGATCGTCACGCGAATTAAGGATACTTGA

Upstream 100 bases:

>100_bases
CACGTTTCAAACAGCCACGACAAAGGGCGGGTCAGAACCTGCCACTTGAAAATTTCTGAAAAACGAACCACACCACAAGT
TGTAAAGATCAAGGTGCGCA

Downstream 100 bases:

>100_bases
TATCGGTGCGACGTTTTGAAGATTTGGACCGACGTTTTCTGGCGCGCTTCACTTTTGCAACCGCCCGGGCAGAAGCGGCC
GCCTCATTGCCGCGCTTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MLAQQFISEDQPRTLFPNRATQLLISAGEDLIKQHIEKCFDKKDGAYSFLPQQRVHATKQGGNLRRTFKLDPVAEYYIYS
TVHSNRARFRKPHQESRSHFGYRFECGAYLNPSLAYQGFRTAISKYMNQYKYFISFDVASYFNSVYHHDLAGWFLNLGVS
TAEYERFGQYFREINAGRSVDILPQGIYPTKVIGNDFLRFVDNHHALKCKQLLRFMDDFYLFSDNAADIRSDFLLVQRLL
GEKSLNLNTGKTSRVTASHTQIAADIDKVKKDLLDRRRIEVTVGGYDGEPDETVNITLRTPLSEKEMNYILKLLAQETLE
EEDAELILTVMKDHAIKAERKLEYIIKEFPNLMKSVFNFCGRIDDREFVADLLLKLLGSNELQEYQLFWFGHILESYLLK
TGKASALIDGIYNHPMATTISKAKILEIADQRFGLSELRDPILKSGQSDWLSWSAAVGERCQPSPIRNHRLAYFAKGSPM
NHLVSTIVTRIKDT

Sequences:

>Translated_494_residues
MLAQQFISEDQPRTLFPNRATQLLISAGEDLIKQHIEKCFDKKDGAYSFLPQQRVHATKQGGNLRRTFKLDPVAEYYIYS
TVHSNRARFRKPHQESRSHFGYRFECGAYLNPSLAYQGFRTAISKYMNQYKYFISFDVASYFNSVYHHDLAGWFLNLGVS
TAEYERFGQYFREINAGRSVDILPQGIYPTKVIGNDFLRFVDNHHALKCKQLLRFMDDFYLFSDNAADIRSDFLLVQRLL
GEKSLNLNTGKTSRVTASHTQIAADIDKVKKDLLDRRRIEVTVGGYDGEPDETVNITLRTPLSEKEMNYILKLLAQETLE
EEDAELILTVMKDHAIKAERKLEYIIKEFPNLMKSVFNFCGRIDDREFVADLLLKLLGSNELQEYQLFWFGHILESYLLK
TGKASALIDGIYNHPMATTISKAKILEIADQRFGLSELRDPILKSGQSDWLSWSAAVGERCQPSPIRNHRLAYFAKGSPM
NHLVSTIVTRIKDT
>Mature_494_residues
MLAQQFISEDQPRTLFPNRATQLLISAGEDLIKQHIEKCFDKKDGAYSFLPQQRVHATKQGGNLRRTFKLDPVAEYYIYS
TVHSNRARFRKPHQESRSHFGYRFECGAYLNPSLAYQGFRTAISKYMNQYKYFISFDVASYFNSVYHHDLAGWFLNLGVS
TAEYERFGQYFREINAGRSVDILPQGIYPTKVIGNDFLRFVDNHHALKCKQLLRFMDDFYLFSDNAADIRSDFLLVQRLL
GEKSLNLNTGKTSRVTASHTQIAADIDKVKKDLLDRRRIEVTVGGYDGEPDETVNITLRTPLSEKEMNYILKLLAQETLE
EEDAELILTVMKDHAIKAERKLEYIIKEFPNLMKSVFNFCGRIDDREFVADLLLKLLGSNELQEYQLFWFGHILESYLLK
TGKASALIDGIYNHPMATTISKAKILEIADQRFGLSELRDPILKSGQSDWLSWSAAVGERCQPSPIRNHRLAYFAKGSPM
NHLVSTIVTRIKDT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56901; Mature: 56901

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAQQFISEDQPRTLFPNRATQLLISAGEDLIKQHIEKCFDKKDGAYSFLPQQRVHATKQ
CCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC
GGNLRRTFKLDPVAEYYIYSTVHSNRARFRKPHQESRSHFGYRFECGAYLNPSLAYQGFR
CCCEEEEEECCCHHHHHHHHHHHCCHHHHCCCHHHHHHHCCEEEECCCCCCCHHHHHHHH
TAISKYMNQYKYFISFDVASYFNSVYHHDLAGWFLNLGVSTAEYERFGQYFREINAGRSV
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE
DILPQGIYPTKVIGNDFLRFVDNHHALKCKQLLRFMDDFYLFSDNAADIRSDFLLVQRLL
EECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH
GEKSLNLNTGKTSRVTASHTQIAADIDKVKKDLLDRRRIEVTVGGYDGEPDETVNITLRT
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEC
PLSEKEMNYILKLLAQETLEEEDAELILTVMKDHAIKAERKLEYIIKEFPNLMKSVFNFC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRIDDREFVADLLLKLLGSNELQEYQLFWFGHILESYLLKTGKASALIDGIYNHPMATTI
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
SKAKILEIADQRFGLSELRDPILKSGQSDWLSWSAAVGERCQPSPIRNHRLAYFAKGSPM
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCH
NHLVSTIVTRIKDT
HHHHHHHHHHHCCC
>Mature Secondary Structure
MLAQQFISEDQPRTLFPNRATQLLISAGEDLIKQHIEKCFDKKDGAYSFLPQQRVHATKQ
CCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC
GGNLRRTFKLDPVAEYYIYSTVHSNRARFRKPHQESRSHFGYRFECGAYLNPSLAYQGFR
CCCEEEEEECCCHHHHHHHHHHHCCHHHHCCCHHHHHHHCCEEEECCCCCCCHHHHHHHH
TAISKYMNQYKYFISFDVASYFNSVYHHDLAGWFLNLGVSTAEYERFGQYFREINAGRSV
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE
DILPQGIYPTKVIGNDFLRFVDNHHALKCKQLLRFMDDFYLFSDNAADIRSDFLLVQRLL
EECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH
GEKSLNLNTGKTSRVTASHTQIAADIDKVKKDLLDRRRIEVTVGGYDGEPDETVNITLRT
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEC
PLSEKEMNYILKLLAQETLEEEDAELILTVMKDHAIKAERKLEYIIKEFPNLMKSVFNFC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRIDDREFVADLLLKLLGSNELQEYQLFWFGHILESYLLKTGKASALIDGIYNHPMATTI
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
SKAKILEIADQRFGLSELRDPILKSGQSDWLSWSAAVGERCQPSPIRNHRLAYFAKGSPM
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCH
NHLVSTIVTRIKDT
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA