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The map label for this gene is yjgF [C]

Identifier: 192289363

GI number: 192289363

Start: 995094

End: 995480

Strand: Reverse

Name: yjgF [C]

Synonym: Rpal_0935

Alternate gene names: 192289363

Gene position: 995480-995094 (Counterclockwise)

Preceding gene: 192289364

Following gene: 192289362

Centisome position: 17.33

GC content: 60.47

Gene sequence:

>387_bases
ATGTCGCGTCGCCTGATTTCCACCGGATCGCCGTTCGAAAAGACTGCCGGCTACAGCCGCGCCGTGGTCGATGGTGATTT
CGTCTTCGTTTCCGGGACCACCGGCTACGACTACACGACCATGAGCCTACCCGAGGATGTGACCTCGCAGACCCGCAACT
GCTTCAAGACCATCGGCGCGGCGCTGAAGGAAGCGGGTTTTGCAATGGAAGACATCGTGCGCGCGACCTACTACATCACC
GACCCGAAGGATGCAGACGCGGTGTTCGCGGTGTGTGGCGAGCATCTTGGCGAGATCCGCCCGGCAGCGACGATCATTGC
GGTTGCCGGCCTGTACAAGCCGGAAATGAAGATCGAAATCGAAGTCACCGCTAAGCGCCGGAGCTGA

Upstream 100 bases:

>100_bases
TGATCCCGGCCGCCGCCTGTTCCCGTGTAAGGCTTGATTTGCCGGGACAGACGCGGCATTGGCTGCTCACCCAAGTTCCA
TCAGCTTCAAGGTCGTTCTC

Downstream 100 bases:

>100_bases
CGCGGGGCGGCCAAAATGCCGCACCACTCACTTCACGCAACAGACCCTTCTCGGCTTCCCCGTTGACTTTCGGACGGGGA
GCCCTACGTTCCGACGATCA

Product: Endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGAALKEAGFAMEDIVRATYYIT
DPKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEIEVTAKRRS

Sequences:

>Translated_128_residues
MSRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGAALKEAGFAMEDIVRATYYIT
DPKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEIEVTAKRRS
>Mature_127_residues
SRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGAALKEAGFAMEDIVRATYYITD
PKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEIEVTAKRRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=33.0645161290323, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=33.0645161290323, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=33.0645161290323, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13929; Mature: 13798

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGA
CCCCCCCCCCCHHHHCCCCEEEECCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
ALKEAGFAMEDIVRATYYITDPKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEI
HHHHCCCCHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE
EVTAKRRS
EEEEECCC
>Mature Secondary Structure 
SRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGA
CCCCCCCCCCHHHHCCCCEEEECCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
ALKEAGFAMEDIVRATYYITDPKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEI
HHHHCCCCHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE
EVTAKRRS
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]