Click here to switch to the map view.

The map label for this gene is yccF [H]

Identifier: 192289270

GI number: 192289270

Start: 891569

End: 891994

Strand: Reverse

Name: yccF [H]

Synonym: Rpal_0842

Alternate gene names: 192289270

Gene position: 891994-891569 (Counterclockwise)

Preceding gene: 192289272

Following gene: 192289269

Centisome position: 15.53

GC content: 65.02

Gene sequence:

>426_bases
ATGTCTCCCGTCTCGCTCCTGCTGAATATCCTTTGGATCGCGCTCGGCGGCTTCTGGATGGCTGTCGGCTGGGCGGTTGC
GGCTGTCATCATGGCAATCACGATCATCGGTTTGCCGTGGGCGCGCGCGGCCTTCAGTATCGGCGTCTACACGCTGTTTC
CGTTCGGGCAGACCGCCGTGCCCCGGGAAGCCCTCACCGGCCGCGAAGATATCGGCACCGGCCCGCTCGGGGTGATCGGC
AACGTCATCTGGCTGGTGTTCGCTGGCTGGTGGCTCGCCATCGGGCATCTCGTCACCGCCGTGCTGCTCGCCGTGACGAT
CATCGGAATTCCGTTCGCCTGGGCCCACCTGAAGCTCGCCGGCATCGCGCTTTGGCCGATCGGCAAGGTCATCGTTCCGA
TCGACGACCTCGGCCTCAGAAGGTGA

Upstream 100 bases:

>100_bases
GCCGGGCCACGATGCTCGACATGATTCCCCAGCCGACTGCGATCCTGCCGGGGCACGACGCAGACGTTGAAACGACCATC
GTTTTCCGGAAGGATTGGCC

Downstream 100 bases:

>100_bases
CGCGGGCGTCACCGCTGTCACACCCGTGGCACACCGCCACCGCTGCACCCTCGCCGCGCGCCCTCCTCCGCCCCACACGA
TTCGAAGCCTGACCCCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSPVSLLLNILWIALGGFWMAVGWAVAAVIMAITIIGLPWARAAFSIGVYTLFPFGQTAVPREALTGREDIGTGPLGVIG
NVIWLVFAGWWLAIGHLVTAVLLAVTIIGIPFAWAHLKLAGIALWPIGKVIVPIDDLGLRR

Sequences:

>Translated_141_residues
MSPVSLLLNILWIALGGFWMAVGWAVAAVIMAITIIGLPWARAAFSIGVYTLFPFGQTAVPREALTGREDIGTGPLGVIG
NVIWLVFAGWWLAIGHLVTAVLLAVTIIGIPFAWAHLKLAGIALWPIGKVIVPIDDLGLRR
>Mature_140_residues
SPVSLLLNILWIALGGFWMAVGWAVAAVIMAITIIGLPWARAAFSIGVYTLFPFGQTAVPREALTGREDIGTGPLGVIGN
VIWLVFAGWWLAIGHLVTAVLLAVTIIGIPFAWAHLKLAGIALWPIGKVIVPIDDLGLRR

Specific function: Unknown

COG id: COG3304

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787195, Length=130, Percent_Identity=36.1538461538462, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005185 [H]

Pfam domain/function: PF03733 DUF307 [H]

EC number: NA

Molecular weight: Translated: 15046; Mature: 14915

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVSLLLNILWIALGGFWMAVGWAVAAVIMAITIIGLPWARAAFSIGVYTLFPFGQTAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PREALTGREDIGTGPLGVIGNVIWLVFAGWWLAIGHLVTAVLLAVTIIGIPFAWAHLKLA
CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIALWPIGKVIVPIDDLGLRR
HHHHCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
SPVSLLLNILWIALGGFWMAVGWAVAAVIMAITIIGLPWARAAFSIGVYTLFPFGQTAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PREALTGREDIGTGPLGVIGNVIWLVFAGWWLAIGHLVTAVLLAVTIIGIPFAWAHLKLA
CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIALWPIGKVIVPIDDLGLRR
HHHHCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2542273; 7984428 [H]