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The map label for this gene is rimP [H]

Identifier: 192288874

GI number: 192288874

Start: 478294

End: 479073

Strand: Reverse

Name: rimP [H]

Synonym: Rpal_0443

Alternate gene names: 192288874

Gene position: 479073-478294 (Counterclockwise)

Preceding gene: 192288877

Following gene: 192288873

Centisome position: 8.34

GC content: 68.21

Gene sequence:

>780_bases
ATGACCGAGCCGACCCCTGCTGTTCCGGAAACCGATGACTTGGCCGAACCGCGCCTGGTGATCGAGCCCGGCGTCGCGGC
GCGGTTCTGCGCGGTCGCCGAGCCCGTGCTGATGGCAATGGGTTACCGCCTGGTCCGGATCAAGGTCTCCGGCGACGCCG
GCTGCACCGTTCAGATCATGGCCGAGCGGCCCGACGGCACCATGCTGATCGACGATTGTGAGGCGGCGTCGCGGGCATTG
TCGCCGGTGCTCGACGTCGCCGATCCGATCGATCGCGCCTATCGGCTGGAGATCTCCTCGCCGGGGATCGACCGTCCGCT
GGTGCGCCGCTCCGATTTCGCCCGTTATGCCGGGCACCTGGTCAAGATCGAGATGGCGGTTCCGCACCAGGGCCGGAAAC
GGTACCGCGGCCTGCTCGACGGCGTCGAAGGCGATGCCGTACGGGTCCAGCGCGAGGGCGCCACGAAGGACGAAGATCCG
TTGGTGCTGCTGCCGATGCACGACATCGGCGATGCCCGGCTGGTGCTGACCGACGAGCTGATCGCCGAATCGATGCGGCG
CGGCAAGCAGGCCGAGCGCGACCTGAAGCAGAGCCTTGGGCTCGCACCGGAACCGCCGCCGCATGCCAAGCGCAGCGATC
CGAAGAAGAGCCATGCGCCCAAGCGCGGCCCAAAGGCCGCCAAGGCGCCGACCAAGCCGAAACCGCAGAACACCAAGCAA
CACCGTCTCGCCGCCGACAAAGCGCGGCGCGGCGAGATCGACACCTCTGAGGGAGACTGA

Upstream 100 bases:

>100_bases
GGATCGTCGGACGTGGACCGCCGCCCCCTCGGGAGCGCGGCCTTCATTCACCACCTTGATACCGTTTATCGGCGAGACGT
TTAACGCTTTGACCCACGAC

Downstream 100 bases:

>100_bases
CCATGGCCGTCAGCGCCAATAGGCTGGAACTGCTGCAGATCGCCGATGCGGTGGCTCGCGAGAAAACCATCGACCGCAGC
ATCGTGATTGCGGCGATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLIDDCEAASRAL
SPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDP
LVLLPMHDIGDARLVLTDELIAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQ
HRLAADKARRGEIDTSEGD

Sequences:

>Translated_259_residues
MTEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLIDDCEAASRAL
SPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDP
LVLLPMHDIGDARLVLTDELIAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQ
HRLAADKARRGEIDTSEGD
>Mature_258_residues
TEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLIDDCEAASRALS
PVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDPL
VLLPMHDIGDARLVLTDELIAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQH
RLAADKARRGEIDTSEGD

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=137, Percent_Identity=37.956204379562, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 28290; Mature: 28159

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIM
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
AERPDGTMLIDDCEAASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHL
EECCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCEE
VKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDPLVLLPMHDIGDARLVLTDEL
EEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCEEEEEHHH
IAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQ
HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHH
HRLAADKARRGEIDTSEGD
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIM
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
AERPDGTMLIDDCEAASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHL
EECCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCEE
VKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDPLVLLPMHDIGDARLVLTDEL
EEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCEEEEEHHH
IAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQ
HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHH
HRLAADKARRGEIDTSEGD
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA