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The map label for this gene is rbfA

Identifier: 192288870

GI number: 192288870

Start: 472606

End: 473019

Strand: Reverse

Name: rbfA

Synonym: Rpal_0439

Alternate gene names: 192288870

Gene position: 473019-472606 (Counterclockwise)

Preceding gene: 192288871

Following gene: 192288869

Centisome position: 8.23

GC content: 65.22

Gene sequence:

>414_bases
ATGTCCCGCCAACACCAGAAGAGTTCCCCGCCCGGCGGCTCGACCCGCTCGCTGCGCGTCGGTGAGCTGATCCGCCACGC
CGTGGCCGAGATCCTCGCCCAGGGCGGCGTGCACGACCCGGTGCTCGAAAGCCACCTCGTCACCGTGCCCGAAGTGCGGA
TGTCGCCCGACCTCAAGCTCGCGACCATCTACGTGATGCCGCTCGGTGGCCGCGACGAGAAGCTCGTGATCGACGCGCTC
GAGCATCACAAGCGCTTCCTGCGCGGTGAAATCGCTCACCGCGTCAATTTGAAGTTCGCCCCCGAACTCCGCTTCCGCAT
CGACGAACGTTTCGCCGAGGCCGAGCGGATCGACAAACTGCTGCGCTCGCCGGCAGTCCAGAAAGACCTCGAACCGAATT
CGGACCAGGATTAA

Upstream 100 bases:

>100_bases
CGCGACTAAGTCCCGGCCGTCCACGTCTTGCTTTGCCACATCGAAGGCGTGCATGCCCGCGGCCAAACGCGGGCATGGCG
GCAGTATTTGAGAGAACATC

Downstream 100 bases:

>100_bases
TGACCGTGACCACCCCCGACGCCCTGCTCGCCCCGCACGACGTGCAGCACGCCGGCGCCGACGAATCCGCCGCGCAGATC
CGTAAGCCGCGCGACAACAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSRQHQKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYVMPLGGRDEKLVIDAL
EHHKRFLRGEIAHRVNLKFAPELRFRIDERFAEAERIDKLLRSPAVQKDLEPNSDQD

Sequences:

>Translated_137_residues
MSRQHQKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYVMPLGGRDEKLVIDAL
EHHKRFLRGEIAHRVNLKFAPELRFRIDERFAEAERIDKLLRSPAVQKDLEPNSDQD
>Mature_136_residues
SRQHQKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYVMPLGGRDEKLVIDALE
HHKRFLRGEIAHRVNLKFAPELRFRIDERFAEAERIDKLLRSPAVQKDLEPNSDQD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RHOPA (Q6NCN6)

Other databases:

- EMBL:   BX572594
- RefSeq:   NP_945788.1
- ProteinModelPortal:   Q6NCN6
- GeneID:   2691677
- GenomeReviews:   BX571963_GR
- KEGG:   rpa:RPA0435
- NMPDR:   fig|258594.1.peg.432
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   RPAL258594:RPA0435-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15483; Mature: 15352

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQHQKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEE
ATIYVMPLGGRDEKLVIDALEHHKRFLRGEIAHRVNLKFAPELRFRIDERFAEAERIDKL
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHH
LRSPAVQKDLEPNSDQD
HHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRQHQKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEE
ATIYVMPLGGRDEKLVIDALEHHKRFLRGEIAHRVNLKFAPELRFRIDERFAEAERIDKL
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHH
LRSPAVQKDLEPNSDQD
HHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA