| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192288796
Identifier: 192288796
GI number: 192288796
Start: 388605
End: 389480
Strand: Reverse
Name: 192288796
Synonym: Rpal_0365
Alternate gene names: NA
Gene position: 389480-388605 (Counterclockwise)
Preceding gene: 192288798
Following gene: 192288792
Centisome position: 6.78
GC content: 65.3
Gene sequence:
>876_bases ATGCGCAACACCCTGCTGACTTCGATTACTTCCGTGCTGCTCGCCGTGGCGGTCTCCGCCGGCGTCGCCGCTGCCGCCGA CGGCACGATCGACAACAGCGCGCTGTCGAAATCCGAATTCCGCGATCACGCCCGCACCTTCGGCCTGGTCTACACCCTGC CCAAGAACGTCAACGACGTTCTCGACAGCACCATTCGCGGGCCGCTGAAGGAAAAGCTGCTGAACGCCAAGCTCGACACC GAAGCGCAGATGTTCAACATCCCGCACGTCACCGTGGTGCACGTCCACAGCGCCGATCCGGCGACGCCGGAGAAGATGCT GGCGGCGATGCCGAAGCTGCCGCCGGTGCTCACCGTCAAGCTGAAGACGTTCTACACCACCGAAGCCGCCAAGGGCGCCG GCCGGCCGTGGTGGTTCGACCTCGGCCTGGTCAAGGAAGGCAAGAGCTTCGACGACATGATGGCGTTCAACACCACCGCC ACGGCAGCGCTGACGCCGCTGCGCGACGGTCCGCTGCCGCGCTGCACCGGCCCGGTCTATGCGGCGATGGGCGACGCCGC CAAGGATCTGGTCCGCACCGTCGGCGTCAGCGGAGTCAACGTCGTCAAGGACGGCAAGGAGCTGCGCTCGCACAATCCGC ACACCACGCTGGTCTACAGCATGGCCAAGTTCACGCCGGAGCTGCAGGCGCAGATGAATCAGGCCGCTAAGGAGTTCAAC CAGATCCTGCCGGACGGCGTCGACGCCACCTTCAAGACCGTGTCGATCGTCGAGCTCGGCTTTGCCGGCAACGTGCTGCG CGAGGTCTATCGGATCAGCCTCGATGACGGCTCGGTGACGACCATCGCCACCGGCAAGACCGCGTCGCTGAAGTAA
Upstream 100 bases:
>100_bases TCGTCATCGACCGCCTGATGCCGATCGAACGTCGCGCCCGATCCGGGCAGCGTCGGCGCGATCGCATCACCTCCGTTCAA ATCCCGCGAAGGGCCAACTC
Downstream 100 bases:
>100_bases TCGTCGTTGCCGGGTATCCGGCACACGGCCAAGAAAAAGGGCGGCCTTGCGGGCCGCCCTTTGTATTTCAATCGATCGCC GGCGCGCTTATTCGGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDVLDSTIRGPLKEKLLNAKLDT EAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVKLKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTA TAALTPLRDGPLPRCTGPVYAAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK
Sequences:
>Translated_291_residues MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDVLDSTIRGPLKEKLLNAKLDT EAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVKLKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTA TAALTPLRDGPLPRCTGPVYAAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK >Mature_291_residues MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDVLDSTIRGPLKEKLLNAKLDT EAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVKLKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTA TAALTPLRDGPLPRCTGPVYAAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31171; Mature: 31171
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDV CCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHH LDSTIRGPLKEKLLNAKLDTEAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVK HHHHHCCHHHHHHHCCCCCCCHHEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEE LKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTATAALTPLRDGPLPRCTGPVY EEEEEECHHHCCCCCCEEEECCEECCCCCHHHHHHHCCCHHHEECCCCCCCCCCCCCCHH AAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN HHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK HHCCCCCCCHHHEEEEEEECCHHHHHHHHHHEECCCCCEEEEECCCCCCCC >Mature Secondary Structure MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDV CCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHH LDSTIRGPLKEKLLNAKLDTEAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVK HHHHHCCHHHHHHHCCCCCCCHHEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEE LKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTATAALTPLRDGPLPRCTGPVY EEEEEECHHHCCCCCCEEEECCEECCCCCHHHHHHHCCCHHHEECCCCCCCCCCCCCCHH AAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN HHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK HHCCCCCCCHHHEEEEEEECCHHHHHHHHHHEECCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA