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The map label for this gene is rhiR [H]

Identifier: 192288754

GI number: 192288754

Start: 343120

End: 343851

Strand: Reverse

Name: rhiR [H]

Synonym: Rpal_0323

Alternate gene names: 192288754

Gene position: 343851-343120 (Counterclockwise)

Preceding gene: 192288755

Following gene: 192288753

Centisome position: 5.99

GC content: 65.3

Gene sequence:

>732_bases
ATGATCGTCGGCGAAGATCAGCTTTGGGGACGGCGTGCGCTGGAATTCGTCGATTCCGTCGAACGGCTCGAGGCGCCGGC
GCTGATCAGCCGGTTCGAATCGCTGATCGCGAGCTGCGGATTTACCGCCTACATCATGGCCGGCCTGCCGTCGCGCAATG
CCGGACTACCGGAGCTGACGCTGGCCAATGGCTGGCCGCGCGACTGGTTCGATCTGTATGTCAGCGAAAACTTCAGCGCG
GTCGATCCGGTGCCGCGCCACGGCGCTACCACGGTTTATCCTTTCGTATGGTCCGATGCACCCTACGACCGCGACCGTGA
CCCGGCCGCCCACCGGGTCATGACCCGGGCGGCCGAATTTGGACTGGTCGAAGGCTACTGCATTCCGCTGCACTACGACG
ACGGTAGCGCCGCGATCAGCATGGCCGGCAAGGATCCGGACCTCAGCCCGGCCGCGCGCGGCGCGATGCAGCTGGTCAGC
ATCTACGCGCATAGTCGCCTGCGCGCGCTCAGCCGGCCAAAGCCGATCCGGCGCAACCGGCTCACGCCGCGCGAGTGCGA
GATCCTGCAATGGGCAGCGCAGGGCAAGACCGCCTGGGAGATCTCGGTGATCCTCTGCATCACCGAGCGCACGGTGAAAT
TCCATCTGATCGAAGCCGCCCGTAAGCTCGACGCCGCCAACCGCACCGCGGCGGTTGCCAAGGCATTGACGCTCGGATTG
ATCCGTTTGTGA

Upstream 100 bases:

>100_bases
GGTGGAAGCGCCGGTGGTAAGCTATTGATGGGTCGATCGGGCGGCGGCTGGCACAGAGAGCCCCGCGGTCCCCGATAGTC
GGATCGGAGGTTGCGGCGGT

Downstream 100 bases:

>100_bases
CCTGTCCGATCGGACAGTAGTTAGATTCCCGTTCGCACCTGCACTGTTCCCGCCTGCAGACCCACTGCAGGAGGGGAATT
TCATCATGCAGGTTCATGTC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSA
VDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVS
IYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL
IRL

Sequences:

>Translated_243_residues
MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSA
VDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVS
IYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL
IRL
>Mature_243_residues
MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSA
VDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVS
IYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL
IRL

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=193, Percent_Identity=31.6062176165803, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26964; Mature: 26964

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELT
CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCEEE
LANGWPRDWFDLYVSENFSAVDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEF
ECCCCCHHHHHHEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHC
GLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNR
CCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL
CCCHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IRL
HCC
>Mature Secondary Structure
MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELT
CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCEEE
LANGWPRDWFDLYVSENFSAVDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEF
ECCCCCHHHHHHEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHC
GLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNR
CCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL
CCCHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IRL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]