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The map label for this gene is yggS [C]

Identifier: 192288719

GI number: 192288719

Start: 306916

End: 307575

Strand: Reverse

Name: yggS [C]

Synonym: Rpal_0288

Alternate gene names: 192288719

Gene position: 307575-306916 (Counterclockwise)

Preceding gene: 192288724

Following gene: 192288717

Centisome position: 5.35

GC content: 64.85

Gene sequence:

>660_bases
ATGAGCGCCGCAGCCAATCTGGCCGCGGTCGAGGCCGAAATCGCCTGTGCCTGCAAGGATGCACGGCGCGAGCGCAGTGA
GGTGACGCTGATCGCAGTGTCGAAGACCTTCGAGGCGGAGGCGATCCGCCCGGTGCTGTCGGCAGGCCAGCGCGTGTTCG
GCGAAAACCGCGTGCAGGAAGCCAAGGGTAAATGGCCGGCGCTGGTCGACGAATACCCTGGCACCGAATTGCATCTGATC
GGACCGCTGCAGTCCAACAAGGCCAAGGATGCTGTCGGGCTGTTCGGTGCGATCCATTCGGTCGATCGTGACAGCCTGTG
CGAAGCCCTGAGCAAGGTGCTGCCGCAGGCTGGCCGAAAGGTCGAACTGTTCGTTCAGATCAACACCGGCGAGGAGCCGC
AGAAGGCGGGCATCGCGCCGCAGGATGCCGATGCCTTTCTGGTCGCTTGCCGCGAGCGCTGGGGGCTGACCATCAGCGGA
CTGATGTGCATCCCACCGGTCGATGAAGCGCCGGCGCCGCATTTCGCGCTATGCGCGAAGATCGCCAAGCGCAATGGCCT
TGCGAAGCTGTCGATGGGCATGAGCGCCGACTTCGCCACCGCCATCCAATTCGGCGCCACCCATGTGCGGGTGGGGTCGG
CGATCTTCGGGCATCGCTGA

Upstream 100 bases:

>100_bases
ATTTGAGCGAAGCCGGAACCGTGGACGAACTCGCCGCATTCATCGCGCCGCCAAGGCCGCCTTTCTCCCGCCGCCGAGCA
TCTTCCGGAGCCTTGAGCTG

Downstream 100 bases:

>100_bases
AGCCGTTTGACCCCAGGGGTCTTCCAAAACGCTGGGGTTTAGCACCCGCCTGCGCGGGTGGTGACACCGAAGCTCGTCAG
GCTAACCGATGACGATCTTC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEYPGTELHLI
GPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISG
LMCIPPVDEAPAPHFALCAKIAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR

Sequences:

>Translated_219_residues
MSAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEYPGTELHLI
GPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISG
LMCIPPVDEAPAPHFALCAKIAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR
>Mature_218_residues
SAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEYPGTELHLIG
PLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISGL
MCIPPVDEAPAPHFALCAKIAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=223, Percent_Identity=34.9775784753363, Blast_Score=100, Evalue=9e-22,
Organism=Escherichia coli, GI1789321, Length=225, Percent_Identity=37.3333333333333, Blast_Score=124, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17533025, Length=212, Percent_Identity=35.8490566037736, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=214, Percent_Identity=35.981308411215, Blast_Score=85, Evalue=9e-18,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=36.9668246445498, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23304; Mature: 23173

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQE
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHH
AKGKWPALVDEYPGTELHLIGPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRK
HCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCE
VELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALCAK
EEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEECEEEECCCCCCCCCHHHHHHH
IAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR
HHHHCCCEEECCCCCCCHHHHHHHCCHHEEECCHHHCCC
>Mature Secondary Structure 
SAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQE
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHH
AKGKWPALVDEYPGTELHLIGPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRK
HCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCE
VELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALCAK
EEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEECEEEECCCCCCCCCHHHHHHH
IAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR
HHHHCCCEEECCCCCCCHHHHHHHCCHHEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]