| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is ygfF [H]
Identifier: 192288614
GI number: 192288614
Start: 197277
End: 198023
Strand: Reverse
Name: ygfF [H]
Synonym: Rpal_0181
Alternate gene names: 192288614
Gene position: 198023-197277 (Counterclockwise)
Preceding gene: 192288615
Following gene: 192288613
Centisome position: 3.45
GC content: 66.13
Gene sequence:
>747_bases ATGAACGATCGCGTCGTCATCATCACCGGAGGCAGCCGCGGCATCGGCCGGGCCACTGCGCTGGGTTGTGCGAAGCGCGG CTTCAAGGTCGTGGTCGGCTACGCCAGTAATGCCGCCGCGGCCGACGAGGTGGTGGCCGAGATAGCAGCCAGCAATGGCA AGGCTATCGCGGTGAAATGCGACGTCGGCAGCGAAGCCGACATTCTCGCGCTGTTCGCTGCCGCGGACGCGTTCGGTCCG CTCGGCGCGCTGGTCAATAATGCTGGCATCGTCGGACCGACCGCGCGGGTCGACGAGATGTCGGCCGAACGCATTCAGCG GATGATGGCGGTTAACGTCACCGGCAGCATTCTGTGCGCGCGTGAGGCGGTGAAGCGGATGTCGACCCGGCACGGCGGTA AGGGCGGCGTCATCGTCAATCTGTCATCGGTCGCGGCCAAACTCGGCTCGCCAAATACCTATGTCGACTACGCGGCCTCC AAGGGTGCGGTCGACTCCTTCACGGTCGGGCTCGGCCACGAAGTCGCCGGCGAAGGCATTCGCGTCGCGGCGATCCGGCC TGGATTGATCGATACCGAGATCCACGCCTCGGGCGGCGATCCGGAACGCGCGCATCGGCTCAGCGTCAACGTGCCGATGA AGCGCGTCGGCCGCGCCGAGGAAATCGCCAACGCCGTCGTCTGGCTGCTGTCCGACGAGGCCTCCTATGTCACCAGCGCC ATCATCGACGTGTCGGGGGGACGATAG
Upstream 100 bases:
>100_bases CTGTACATCATCGAAATCCCGTTCGCCCGCAGCATTGTCTGGTTCGTGTCGCTGTTGGCGCTGATCGCGATGCTGGTCCG GCTATTGAGTTGAGGAGCCG
Downstream 100 bases:
>100_bases TCGCGCCGGCGCCAACTCACAGGATTGAACTATGGCCACCTACGATCTCGTCGTCATCGGCACCGGCCCCGGCGGCTACG TCTGCGCGATTCGCGCGGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKCDVGSEADILALFAAADAFGP LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAAS KGAVDSFTVGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA IIDVSGGR
Sequences:
>Translated_248_residues MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKCDVGSEADILALFAAADAFGP LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAAS KGAVDSFTVGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA IIDVSGGR >Mature_248_residues MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKCDVGSEADILALFAAADAFGP LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAAS KGAVDSFTVGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA IIDVSGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=34.1463414634146, Blast_Score=111, Evalue=6e-25, Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=32.5, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=30.2325581395349, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=30.6122448979592, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=32.1608040201005, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=259, Percent_Identity=27.4131274131274, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=28.1746031746032, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=32.0610687022901, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=29.3650793650794, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=245, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=206, Percent_Identity=32.0388349514563, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI19923983, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=55.9183673469388, Blast_Score=282, Evalue=2e-77, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=33.0677290836653, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=36.4372469635627, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.4285714285714, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=35.3413654618474, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=30.9803921568627, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=29.6, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=30.6513409961686, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=28.1746031746032, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=25.5905511811024, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=34.2741935483871, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.0163934426229, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=33.984375, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=34.5381526104418, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=33.4630350194552, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=30.7984790874525, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=29.6, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=28.4090909090909, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=32.4110671936759, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.188679245283, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17563726, Length=247, Percent_Identity=29.5546558704453, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI72000259, Length=273, Percent_Identity=30.03663003663, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=31.2977099236641, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.5789473684211, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=30.6513409961686, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=27.7153558052434, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=29.4820717131474, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.3524904214559, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17544670, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI72001658, Length=223, Percent_Identity=29.5964125560538, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=30.9644670050761, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=32.6530612244898, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=28.1954887218045, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=31.4720812182741, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=29.4573643410853, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=257, Percent_Identity=30.3501945525292, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=243, Percent_Identity=29.6296296296296, Blast_Score=75, Evalue=7e-15, Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=35, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=35, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=34.765625, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=34.6774193548387, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=32.4110671936759, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=32.2834645669291, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=34.1584158415842, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI17737361, Length=236, Percent_Identity=33.4745762711864, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24648693, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355889, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=33.1428571428571, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24641388, Length=237, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI161076933, Length=206, Percent_Identity=27.1844660194175, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=27.9166666666667, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24584748, Length=206, Percent_Identity=27.1844660194175, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=27.0161290322581, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24640492, Length=197, Percent_Identity=29.9492385786802, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=240, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21356301, Length=191, Percent_Identity=30.8900523560209, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25283; Mature: 25283
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKC CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE DVGSEADILALFAAADAFGPLGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCA CCCCCCCCEEEEEHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH REAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAASKGAVDSFTVGLGHEVAGEGI HHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHCCCCE RVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA EEEEECCCCEEEEEECCCCCHHHHEEEEECCCHHHCCCHHHHHHHEEEEECCCHHHHEEE IIDVSGGR EEEECCCC >Mature Secondary Structure MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKC CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE DVGSEADILALFAAADAFGPLGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCA CCCCCCCCEEEEEHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH REAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAASKGAVDSFTVGLGHEVAGEGI HHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHCCCCE RVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA EEEEECCCCEEEEEECCCCCHHHHEEEEECCCHHHCCCHHHHHHHEEEEECCCHHHHEEE IIDVSGGR EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]