| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is fabG [H]
Identifier: 192288546
GI number: 192288546
Start: 125453
End: 126241
Strand: Reverse
Name: fabG [H]
Synonym: Rpal_0113
Alternate gene names: 192288546
Gene position: 126241-125453 (Counterclockwise)
Preceding gene: 192288548
Following gene: 192288545
Centisome position: 2.2
GC content: 66.16
Gene sequence:
>789_bases ATGCGTTTCAACGGCAAGGTCGCTGTCGTCACGGCAGCAGCATCGGGCATTGGCGCCGCCACGGCCGCCCGTCTCGCGCG GGAAGGCGCGTATGTCTATCTCTCGGATATTGATCAGGACGCTCTGGGCCGACAGGCCGAATCTTTGGTCGACGTCGCTG AGCGGATTTCGACGGTGGTGGCTGATGTCACCGTACCCGAGCAGGTCTCGGCGCTAATTGACGGAGCCGCGCGCGAGCGG GGCCGGCTCGATATCCTGATCAACAATGCCGGCATGGGCGCGTTCGGCCGCATCACCGAGGTGACGCCGGAAGCCTGGCA CCGCGTCTTCGGGATCTGCGTGGATTCGATCTTTCACGCAAGTCGCGCCGCGATCCCGCATCTAATCAAGGCCCGCGGCA CTATCGTCAACACCGCTTCTATCTCCGGTCTGTTCGGCGACTACGGCTTCGCTGCCTACAACGCCGCGAAGGGCGCGGTG ATCAATCTCACCCGCAACATGGCGCTCGACTACAGCCGCGACGGCCTTCGCGTGAACGCGGTCTGCCCCGGCCTCATCGC GACGCCGCTGTCGCTGAAGCTGCGCGACAACGCAGCGGTGATGGCCGAGTACGACCGGCTGATCCCGCTCGGCCGCGCCG GTTCGCCCGAAGAGGTCGCTGGCGCGATCGCTTTCCTCGCGTCCGACGATGCGTCCTACATCACCGGCGTCGCCTTCGCG GTCGATGGCGGGCTGACTGCCCGAACCGGGCAGCCGAACTTCCTCGGGCACCTGGCGCCCAAGCCCTGA
Upstream 100 bases:
>100_bases GGTGCGCGCTCGCGATCTGTATAACGCGTTATATCAAAAGTGGCGGTCAACGTCACACCGCAGCCGCCAAGCGGCGCGGA TTTCGGGAGGACGCATTACC
Downstream 100 bases:
>100_bases ACCGCCCCTCCGCGCAGACCAACGAGAAAAGGAAACACCCATGTCCGCAGCGACTTCGTCGGCCGGCGACTGGCTCGAGG GCGGCGAACTGCTCGCCCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVVADVTVPEQVSALIDGAARER GRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHASRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAV INLTRNMALDYSRDGLRVNAVCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA VDGGLTARTGQPNFLGHLAPKP
Sequences:
>Translated_262_residues MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVVADVTVPEQVSALIDGAARER GRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHASRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAV INLTRNMALDYSRDGLRVNAVCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA VDGGLTARTGQPNFLGHLAPKP >Mature_262_residues MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVVADVTVPEQVSALIDGAARER GRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHASRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAV INLTRNMALDYSRDGLRVNAVCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA VDGGLTARTGQPNFLGHLAPKP
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=35.1020408163265, Blast_Score=139, Evalue=2e-33, Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=34.0909090909091, Blast_Score=128, Evalue=6e-30, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=32.2175732217573, Blast_Score=121, Evalue=6e-28, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=35.3174603174603, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI59889578, Length=221, Percent_Identity=35.7466063348416, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=31.0756972111554, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=28.515625, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=31.5352697095436, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI4504505, Length=266, Percent_Identity=28.9473684210526, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=30.1960784313725, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI31542939, Length=246, Percent_Identity=30.0813008130081, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=30.327868852459, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=32.6693227091633, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=30.241935483871, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.939226519337, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=28.6274509803922, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40807363, Length=194, Percent_Identity=27.319587628866, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=233, Percent_Identity=26.6094420600858, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI25282469, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI19923983, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=35.9683794466403, Blast_Score=158, Evalue=4e-40, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.5381526104418, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=35.0806451612903, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=30.7377049180328, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=33.7301587301587, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=32.2448979591837, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=32.258064516129, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=33.6, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=27.710843373494, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=33.7349397590361, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=28.8537549407115, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=29.1338582677165, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=23.7068965517241, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=37.4015748031496, Blast_Score=156, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=33.0882352941176, Blast_Score=138, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=34.9624060150376, Blast_Score=137, Evalue=5e-33, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=33.469387755102, Blast_Score=136, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=34.6007604562738, Blast_Score=135, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=34.5528455284553, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=37.2623574144487, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=35.9183673469388, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=33.6996336996337, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=36.0594795539033, Blast_Score=127, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17544670, Length=282, Percent_Identity=32.2695035460993, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=34.7328244274809, Blast_Score=126, Evalue=9e-30, Organism=Caenorhabditis elegans, GI17562910, Length=276, Percent_Identity=34.4202898550725, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=34.7328244274809, Blast_Score=125, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=32, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI72000259, Length=276, Percent_Identity=33.695652173913, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=34.2307692307692, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=33.8403041825095, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=33.4586466165414, Blast_Score=120, Evalue=8e-28, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=32.2448979591837, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=32.8358208955224, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=33.457249070632, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=34.0740740740741, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=33.2089552238806, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=32.5581395348837, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=33.4645669291339, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=31.3492063492063, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=32.6424870466321, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=30.9160305343511, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=33.0769230769231, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI115534694, Length=257, Percent_Identity=28.0155642023346, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=26.5957446808511, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193203117, Length=245, Percent_Identity=23.265306122449, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193203115, Length=241, Percent_Identity=23.6514522821577, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508895, Length=189, Percent_Identity=23.8095238095238, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997099, Length=254, Percent_Identity=28.3464566929134, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.9371727748691, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=31.1224489795918, Blast_Score=72, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=205, Percent_Identity=28.780487804878, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=39.2712550607287, Blast_Score=155, Evalue=2e-38, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=38.28125, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=37.4015748031496, Blast_Score=150, Evalue=1e-36, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=36.5461847389558, Blast_Score=147, Evalue=7e-36, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=36.6533864541833, Blast_Score=141, Evalue=5e-34, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=35.9183673469388, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=35.7429718875502, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=33.9920948616601, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=29.6747967479675, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24581726, Length=205, Percent_Identity=27.8048780487805, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=29.7979797979798, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24665243, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI221331218, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24665247, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221331216, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=24.8704663212435, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=27.7551020408163, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI45554248, Length=272, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640117, Length=272, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=192, Percent_Identity=28.6458333333333, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI22024069, Length=206, Percent_Identity=29.6116504854369, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221510726, Length=189, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=29.8969072164948, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27310; Mature: 27310
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVV CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH ADVTVPEQVSALIDGAARERGRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHA HCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHHH SRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAVINLTRNMALDYSRDGLRVNA HHHHHHHHHHHCCCEEECHHHCCHHCCCCHHHHHCCCCEEEEEEECEEEEECCCCEEEEE VCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA ECCCHHHCCEEEEEECCCEEEEHHHHHCCCCCCCCHHHHHHHHHEEECCCCHHHEEEEEE VDGGLTARTGQPNFLGHLAPKP ECCCEEECCCCCCCCCCCCCCC >Mature Secondary Structure MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVV CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH ADVTVPEQVSALIDGAARERGRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHA HCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHHH SRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAVINLTRNMALDYSRDGLRVNA HHHHHHHHHHHCCCEEECHHHCCHHCCCCHHHHHCCCCEEEEEEECEEEEECCCCEEEEE VCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA ECCCHHHCCEEEEEECCCEEEEHHHHHCCCCCCCCHHHHHHHHHEEECCCCHHHEEEEEE VDGGLTARTGQPNFLGHLAPKP ECCCEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]