Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192288528

Identifier: 192288528

GI number: 192288528

Start: 103344

End: 103685

Strand: Reverse

Name: 192288528

Synonym: Rpal_0095

Alternate gene names: NA

Gene position: 103685-103344 (Counterclockwise)

Preceding gene: 192288529

Following gene: 192288527

Centisome position: 1.81

GC content: 66.37

Gene sequence:

>342_bases
ATGCGCTCCTCATCGATGATCTTGCTCGGTGCCATCGCGCTCGTTGCCGCGCTGTCGGTGGTGAACCAGGTCGGTGTGCC
TCACCCGGCCCTGATCGAACCCGCCGTCGCCGCCACGCCGATCGCGCCGCCGGTCAGTGCTTTCCGCACCGTGACGTCGT
CGACCTGCTCGTCCAACGGCTGCCCGACCTCGTGCGAGGCGGATGAAGCGCTGATCTCCGCGATCTGCATCGGTCCGAGC
AGCGCCAAGTTCAGCGACAACCTTTCTCTGGAGAACGGGCAGATGACCGCGAGCTGCGGCCCGAGCTCCTCCACCATCGT
GGTGTCCTGCGCCCGCAAGTAA

Upstream 100 bases:

>100_bases
TAAGCGTGCTGAAACTTGCGCCTGTTGAAATTCCGGGGCGTTGATAACATGCTGCAGTTGCAAACCGTCTGGTGACAATT
CCAACAGGTATGGAGGTAGT

Downstream 100 bases:

>100_bases
CGCAGGCAGTTCGCTTCTGGGAGCCGGCGGCTGATCCAAGCACCCGCGGGCTCCCGTCAGTCTCAAAGGTTCTCTCCGAT
GCAAAACTGGTTCATCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNGCPTSCEADEALISAICIGPS
SAKFSDNLSLENGQMTASCGPSSSTIVVSCARK

Sequences:

>Translated_113_residues
MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNGCPTSCEADEALISAICIGPS
SAKFSDNLSLENGQMTASCGPSSSTIVVSCARK
>Mature_113_residues
MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNGCPTSCEADEALISAICIGPS
SAKFSDNLSLENGQMTASCGPSSSTIVVSCARK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11251; Mature: 11251

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCC
CPTSCEADEALISAICIGPSSAKFSDNLSLENGQMTASCGPSSSTIVVSCARK
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCC
>Mature Secondary Structure
MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCC
CPTSCEADEALISAICIGPSSAKFSDNLSLENGQMTASCGPSSSTIVVSCARK
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA