Click here to switch to the map view.

The map label for this gene is hspH [H]

Identifier: 192288489

GI number: 192288489

Start: 59520

End: 59945

Strand: Reverse

Name: hspH [H]

Synonym: Rpal_0056

Alternate gene names: 192288489

Gene position: 59945-59520 (Counterclockwise)

Preceding gene: 192288490

Following gene: 192288488

Centisome position: 1.04

GC content: 57.98

Gene sequence:

>426_bases
ATGTCTCGTGTTCCTTCGTTATCTAGTCCCTTCCTGCTGGGATTCGACGAGATCGAGCGTGCGCTCGACCGCGTCGTCAA
AGGCGCCGACGGGTACCCCCCGTACAACATCGAACGGTGCGAACGCAGCAACGGCGATCCCGAAAAGCTGCGCATCACAC
TGGCGGTGGCTGGATTCACCCGCGATCAACTCGATGTCACAGTTGAGGAAAATCAACTGGTGATCCGGGGCCGGCAGCAG
GATGACAAAACTCGGCAATACATCCACCGCGGCATTGCCGCACGTCACTTCCAGCGGACTTTCGTGCTGGCCGATGGGAT
GCAGGTGTTGGGTGCGGACCTGAAGAACGGGTTGTTGTCGATCGACCTGATTCGGCCGGAGCCGGAAAGGGTCATTAAGA
CAATCGCCATCACCGAACACGAATAA

Upstream 100 bases:

>100_bases
TTTGCACTGCCCATATTGGTCTGGACTGGACGGCGAGGTGCCGGACGGTCGACGGGGTGCCGCAAGGACCCCCTCAAAGT
CGCTTCGAGAGGACTTTGTG

Downstream 100 bases:

>100_bases
TGGAACGAGTAGCGGACTCGACCGCTTAGTCTCCTAGAGGAGTCGAGACCATGACTGAAGCTGGTACTACGCATGGAAAT
GTGGGCGTCACGCCGGAGGC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFTRDQLDVTVEENQLVIRGRQQ
DDKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLSIDLIRPEPERVIKTIAITEHE

Sequences:

>Translated_141_residues
MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFTRDQLDVTVEENQLVIRGRQQ
DDKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLSIDLIRPEPERVIKTIAITEHE
>Mature_140_residues
SRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFTRDQLDVTVEENQLVIRGRQQD
DKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLSIDLIRPEPERVIKTIAITEHE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=119, Percent_Identity=43.6974789915966, Blast_Score=96, Evalue=9e-22,
Organism=Escherichia coli, GI87082316, Length=130, Percent_Identity=39.2307692307692, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15984; Mature: 15853

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFT
CCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHEEEEEEEECCC
RDQLDVTVEENQLVIRGRQQDDKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLS
CCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCEEE
IDLIRPEPERVIKTIAITEHE
EEEECCCHHHHHHHHEECCCC
>Mature Secondary Structure 
SRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFT
CCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHEEEEEEEECCC
RDQLDVTVEENQLVIRGRQQDDKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLS
CCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCEEE
IDLIRPEPERVIKTIAITEHE
EEEECCCHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]