Click here to switch to the map view.

The map label for this gene is yubM [H]

Identifier: 190895244

GI number: 190895244

Start: 1003810

End: 1005927

Strand: Reverse

Name: yubM [H]

Synonym: RHECIAT_PC0000917

Alternate gene names: 190895244

Gene position: 1005927-1003810 (Counterclockwise)

Preceding gene: 190895246

Following gene: 190895243

Centisome position: 92.16

GC content: 61.14

Gene sequence:

>2118_bases
ATGGCACAAGCCATCCAGAAAATCACCCTCAGTGCAGCCCGCGACATCCCCTTCAACAAGCTGGTGCTCAGCCAGCAGAA
CGTCCGCAAGATCAAGGCGGGTGTGTCGATCGAGGATCTTGCGGAGGACATCGCCCACCGCGGTCTTTTGGCCAGCCTTA
ACGTTCGGCCCGAAGTTGATCATGAGGGCAAAGAAACCGGTATGTACCGCATCCCGGCCGGCGGGCGTCGCTATCGTGCT
CTTGAGTGGCTCGTGTCGCAGAAACGGCTTGGCCAAACCGCCGGCGTTCCGTGCATCGTCAGCAGCAGTGGGACGCCGGA
GGTTGAGGATTCCCTTGCCGAAAACGTCCATCGCGTCAGCCTGCATCCTCTTGATCAGTTCCGCGCCTTCCAGGCGCTGC
GGGAGCAGGGGCTCGGCGAGGAAGAAACCGCTGCGCGGTTCTTCGTCTCCGTCGCCACGGTGAGGCAGCGCCTGCGGCTT
GCGTCGGTCTCGTCCCGGCTTCTCGATCTCTACGCCGAAGACGATATGAACCTCGAGCAGATCATGGCGTTCTCGATCAC
TAACGATCATGTCCGCCAGGAACAGGTCTGGGATACGCTCTCCCGATCGCATAGTCGCGAGCCATATTACATCCGGCGCT
TACTGACTGAAACCGCGATCCGCGCCAGTGACCGTCGCGCCGTCTATGTCGGCGTCGATGTCTATGAAGCGGCCGGCGGC
GTGGTGATGCGCGATCTGTTCGAGCAGGATCAGGGCGGATGGCTGCAGGATCCGGTGCTTCTGGAGCAGCTCGCGCTCGA
AAAACTCAAGGCCGACGCCGATGCGATCCAGGAGGCCGAAGGCTGGAAATGGATCGAAGCCGCTTTCGATTTTTCCTATG
GCCATACATCCGGTCTTCGTCGCTTCTACGGGGCGCAGGCCGAGATGGCCGAGGAGGAGCGCGCCCGCTACGATGCTACA
CGGGCCGAATACGACAAGCTCGATGCGGAGTATGCCAAGGCGAGCGAATATTCCGCGGCAACCGAACAGAGGCTCGAGGA
ACTCGGCACCGATATCGACCGGCTCCATGATCGACCCTATGTCTTCGACGCCGAGGACGTTGCTCGCGGCGGCGTCTTTG
TTTCGCTTGGCGCCGGCGGCGAGCTCAAGATAGAACGAGGGTTCGTACGACCCGAAGATGAGCAAAAAGCGGACGTCGAG
GCCTTCGATGCTGACGATGGTGGTAGCGTCGATCTCAATGGCCGCTCATCCGTCACCGAGGAAACGGCTGCTGGCGGTGA
TCAATCGGATGACGAGGATGAGACGATCAAACCGCTACCCGATCGCCTGGTTCTCGATCTGACGGCCGCGCGGACTGTTG
CGCTCCGCAATGGGCTCGCCAACGATCCGGTCGTGGCCTTCATTGCCGTGCTGCACGCCTTCGTGTTGAAGACCTTCTAT
TCCTATGGTTCGGACTCATGCCTGGAGATAACGTTGCAGAGCGCGAAATTCAGCCAAACTGACGGGCTCGGCGACACGGT
ATGGGCAAAGGAAATCGACCAGCGGCAGGAGGGCTGGGGCCAGGATCTTCCCAGGGATCCGAATGATCTCTGGGCGTTTC
TGATCGGTCTCGACGATGTGAGCCGACAGGCGCTTTTTGCGCATTGCGCCTCGCTATCGGTCAATGCGGTGATCGAGCCC
TGGAACAAGCGAACCCGCGCAATCGCGCACGCCGATCAACTGGCCCGCTCAATCGGCTTTGGGATGGTCGAGGCAGGATG
GGCGCCGACGGCTGACAACTACTTCGGACGCGTCACCAAGGCTCGTATCCTACAGGCGGTCCGCGAGGCGAAGGGCAATC
GGTCGGCGGAGCTGATCGGCCATCTCAAGAAGGCCGACATGGCCCTCGAAGCCGAACGGCTGATGACCAATAGCGGTTGG
CTGCCCGAACCGCTTCGGCTTGTCACAGACAGCGCCTCGTTCGAGCAGGGGATTGTCGAAGCCGGCGAGATTGCTGATGG
CGGGACAGTCGGGACACCGGCGCCTGATCTCCCGGCTTTCCTCACCGACGCCTCGGATAATGCCTCCACGCCAACTGACG
AGATCGACGAACACCAGCATCTCGACGCGGCCGAATAA

Upstream 100 bases:

>100_bases
TGCTGGCCGGCCGAGTGAGAGGCAGAGGAGGGAACGGGAGGCTGTGGCGGAATGAGAGGTTTGGAGAGAGGCTCCAGCCG
GTCCGCCATGGAGAAACGAC

Downstream 100 bases:

>100_bases
CCCCCGTTTCACGAGACTGAACCGACGGCCCGGCTCCGAAATGAGACCGGGCCGCATCCGTTTCCAGGAGAGTGTAATGT
CCGATTTTACGATCGAAACC

Product: putative plasmid stabilization protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MAQAIQKITLSAARDIPFNKLVLSQQNVRKIKAGVSIEDLAEDIAHRGLLASLNVRPEVDHEGKETGMYRIPAGGRRYRA
LEWLVSQKRLGQTAGVPCIVSSSGTPEVEDSLAENVHRVSLHPLDQFRAFQALREQGLGEEETAARFFVSVATVRQRLRL
ASVSSRLLDLYAEDDMNLEQIMAFSITNDHVRQEQVWDTLSRSHSREPYYIRRLLTETAIRASDRRAVYVGVDVYEAAGG
VVMRDLFEQDQGGWLQDPVLLEQLALEKLKADADAIQEAEGWKWIEAAFDFSYGHTSGLRRFYGAQAEMAEEERARYDAT
RAEYDKLDAEYAKASEYSAATEQRLEELGTDIDRLHDRPYVFDAEDVARGGVFVSLGAGGELKIERGFVRPEDEQKADVE
AFDADDGGSVDLNGRSSVTEETAAGGDQSDDEDETIKPLPDRLVLDLTAARTVALRNGLANDPVVAFIAVLHAFVLKTFY
SYGSDSCLEITLQSAKFSQTDGLGDTVWAKEIDQRQEGWGQDLPRDPNDLWAFLIGLDDVSRQALFAHCASLSVNAVIEP
WNKRTRAIAHADQLARSIGFGMVEAGWAPTADNYFGRVTKARILQAVREAKGNRSAELIGHLKKADMALEAERLMTNSGW
LPEPLRLVTDSASFEQGIVEAGEIADGGTVGTPAPDLPAFLTDASDNASTPTDEIDEHQHLDAAE

Sequences:

>Translated_705_residues
MAQAIQKITLSAARDIPFNKLVLSQQNVRKIKAGVSIEDLAEDIAHRGLLASLNVRPEVDHEGKETGMYRIPAGGRRYRA
LEWLVSQKRLGQTAGVPCIVSSSGTPEVEDSLAENVHRVSLHPLDQFRAFQALREQGLGEEETAARFFVSVATVRQRLRL
ASVSSRLLDLYAEDDMNLEQIMAFSITNDHVRQEQVWDTLSRSHSREPYYIRRLLTETAIRASDRRAVYVGVDVYEAAGG
VVMRDLFEQDQGGWLQDPVLLEQLALEKLKADADAIQEAEGWKWIEAAFDFSYGHTSGLRRFYGAQAEMAEEERARYDAT
RAEYDKLDAEYAKASEYSAATEQRLEELGTDIDRLHDRPYVFDAEDVARGGVFVSLGAGGELKIERGFVRPEDEQKADVE
AFDADDGGSVDLNGRSSVTEETAAGGDQSDDEDETIKPLPDRLVLDLTAARTVALRNGLANDPVVAFIAVLHAFVLKTFY
SYGSDSCLEITLQSAKFSQTDGLGDTVWAKEIDQRQEGWGQDLPRDPNDLWAFLIGLDDVSRQALFAHCASLSVNAVIEP
WNKRTRAIAHADQLARSIGFGMVEAGWAPTADNYFGRVTKARILQAVREAKGNRSAELIGHLKKADMALEAERLMTNSGW
LPEPLRLVTDSASFEQGIVEAGEIADGGTVGTPAPDLPAFLTDASDNASTPTDEIDEHQHLDAAE
>Mature_704_residues
AQAIQKITLSAARDIPFNKLVLSQQNVRKIKAGVSIEDLAEDIAHRGLLASLNVRPEVDHEGKETGMYRIPAGGRRYRAL
EWLVSQKRLGQTAGVPCIVSSSGTPEVEDSLAENVHRVSLHPLDQFRAFQALREQGLGEEETAARFFVSVATVRQRLRLA
SVSSRLLDLYAEDDMNLEQIMAFSITNDHVRQEQVWDTLSRSHSREPYYIRRLLTETAIRASDRRAVYVGVDVYEAAGGV
VMRDLFEQDQGGWLQDPVLLEQLALEKLKADADAIQEAEGWKWIEAAFDFSYGHTSGLRRFYGAQAEMAEEERARYDATR
AEYDKLDAEYAKASEYSAATEQRLEELGTDIDRLHDRPYVFDAEDVARGGVFVSLGAGGELKIERGFVRPEDEQKADVEA
FDADDGGSVDLNGRSSVTEETAAGGDQSDDEDETIKPLPDRLVLDLTAARTVALRNGLANDPVVAFIAVLHAFVLKTFYS
YGSDSCLEITLQSAKFSQTDGLGDTVWAKEIDQRQEGWGQDLPRDPNDLWAFLIGLDDVSRQALFAHCASLSVNAVIEPW
NKRTRAIAHADQLARSIGFGMVEAGWAPTADNYFGRVTKARILQAVREAKGNRSAELIGHLKKADMALEAERLMTNSGWL
PEPLRLVTDSASFEQGIVEAGEIADGGTVGTPAPDLPAFLTDASDNASTPTDEIDEHQHLDAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 77802; Mature: 77671

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAIQKITLSAARDIPFNKLVLSQQNVRKIKAGVSIEDLAEDIAHRGLLASLNVRPEVD
CCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCC
HEGKETGMYRIPAGGRRYRALEWLVSQKRLGQTAGVPCIVSSSGTPEVEDSLAENVHRVS
CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCCCEEECCCCCCHHHHHHHHHHHHEE
LHPLDQFRAFQALREQGLGEEETAARFFVSVATVRQRLRLASVSSRLLDLYAEDDMNLEQ
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IMAFSITNDHVRQEQVWDTLSRSHSREPYYIRRLLTETAIRASDRRAVYVGVDVYEAAGG
HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCC
VVMRDLFEQDQGGWLQDPVLLEQLALEKLKADADAIQEAEGWKWIEAAFDFSYGHTSGLR
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEHHHHHCCCCCHHHHH
RFYGAQAEMAEEERARYDATRAEYDKLDAEYAKASEYSAATEQRLEELGTDIDRLHDRPY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
VFDAEDVARGGVFVSLGAGGELKIERGFVRPEDEQKADVEAFDADDGGSVDLNGRSSVTE
EECHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCH
ETAAGGDQSDDEDETIKPLPDRLVLDLTAARTVALRNGLANDPVVAFIAVLHAFVLKTFY
HHHCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SYGSDSCLEITLQSAKFSQTDGLGDTVWAKEIDQRQEGWGQDLPRDPNDLWAFLIGLDDV
HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHEHHHHHHHH
SRQALFAHCASLSVNAVIEPWNKRTRAIAHADQLARSIGFGMVEAGWAPTADNYFGRVTK
HHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
ARILQAVREAKGNRSAELIGHLKKADMALEAERLMTNSGWLPEPLRLVTDSASFEQGIVE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHH
AGEIADGGTVGTPAPDLPAFLTDASDNASTPTDEIDEHQHLDAAE
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
AQAIQKITLSAARDIPFNKLVLSQQNVRKIKAGVSIEDLAEDIAHRGLLASLNVRPEVD
CHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCC
HEGKETGMYRIPAGGRRYRALEWLVSQKRLGQTAGVPCIVSSSGTPEVEDSLAENVHRVS
CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCCCEEECCCCCCHHHHHHHHHHHHEE
LHPLDQFRAFQALREQGLGEEETAARFFVSVATVRQRLRLASVSSRLLDLYAEDDMNLEQ
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IMAFSITNDHVRQEQVWDTLSRSHSREPYYIRRLLTETAIRASDRRAVYVGVDVYEAAGG
HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCC
VVMRDLFEQDQGGWLQDPVLLEQLALEKLKADADAIQEAEGWKWIEAAFDFSYGHTSGLR
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEHHHHHCCCCCHHHHH
RFYGAQAEMAEEERARYDATRAEYDKLDAEYAKASEYSAATEQRLEELGTDIDRLHDRPY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
VFDAEDVARGGVFVSLGAGGELKIERGFVRPEDEQKADVEAFDADDGGSVDLNGRSSVTE
EECHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCH
ETAAGGDQSDDEDETIKPLPDRLVLDLTAARTVALRNGLANDPVVAFIAVLHAFVLKTFY
HHHCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SYGSDSCLEITLQSAKFSQTDGLGDTVWAKEIDQRQEGWGQDLPRDPNDLWAFLIGLDDV
HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHEHHHHHHHH
SRQALFAHCASLSVNAVIEPWNKRTRAIAHADQLARSIGFGMVEAGWAPTADNYFGRVTK
HHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
ARILQAVREAKGNRSAELIGHLKKADMALEAERLMTNSGWLPEPLRLVTDSASFEQGIVE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHH
AGEIADGGTVGTPAPDLPAFLTDASDNASTPTDEIDEHQHLDAAE
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]