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The map label for this gene is virB1c [H]

Identifier: 190895238

GI number: 190895238

Start: 999758

End: 1000420

Strand: Reverse

Name: virB1c [H]

Synonym: RHECIAT_PC0000911

Alternate gene names: 190895238

Gene position: 1000420-999758 (Counterclockwise)

Preceding gene: 190895239

Following gene: 190895237

Centisome position: 91.65

GC content: 62.44

Gene sequence:

>663_bases
ATGGCCGGTTCTTTCGTCGATATCGCCCAAACCTGCGCACCGATGGTGAAGGTGGAGACGCTTGCAGGCATTGTAAGCCT
CGAGAGCCGGTTCCAGCCATTTGCCGTTCGCATCAACAGCGGTCCTCCGCTTCCCGCCCAACCCGTATCGAAGGCGGAGG
CGATCGAGGTCGCCACGTCGCTGATTGCCGACCGCCAGGATATCCAGATCGGTCTTGGCGGTATTGGCATCGAGCAGCTT
CAAAAACTGAAACTATCCGTCGCGGACGCCTTCGATCCCTGCCTGAACCTCAAGGCCACGGCCACGCTTCTCGATGGATA
TCTTCGCGTCGCTGTGCGCGCGGGGGACGATCCGGCCCTGGCTGAGACAGTGATGCTCCAGTCCTACTACGGCCGCGACG
ATCCATCCCTCGGCGCCATGGTCAAATACGACGAGCAGGTGCGCCGGGAAGCAAAGCGGCTATCGCCGATCCTGGCCTCG
CTCACCGTCGGCGAGCCCGATAGCCGGGCCGGCCCTGGCGAGCAGCTGCAAGATGACGCGGCGCCGGCGCTTGCGAAGCA
ATCCTCCCAAACCACCGAGGCCGCGTCCTGGGACGTTTTCAGCTCCCGGCGGCAATCCGCGGTTCTCGTTTTCCAGAATG
ATCGATCGGAGCAAAGTGAATGA

Upstream 100 bases:

>100_bases
CCTAGGCTACACGATGGTGCGCCCCAATGTGCGTTCGCAGCCGCATTATGTCGACATCGCTATCGATGGCGCCGGTAAGC
AGCGCGTCTGGTACTGACCG

Downstream 100 bases:

>100_bases
TCTCCAAAGCCAGCCTTCGCCCGCTTGCCGCATCCACCCTCATGGCGGCCGCCATCCTCGCCTGCCTGGTCGAACCAGCT
TTCGCCCAGGCCGCCGGTAT

Product: transport secretion system IV protein, VirB1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAGSFVDIAQTCAPMVKVETLAGIVSLESRFQPFAVRINSGPPLPAQPVSKAEAIEVATSLIADRQDIQIGLGGIGIEQL
QKLKLSVADAFDPCLNLKATATLLDGYLRVAVRAGDDPALAETVMLQSYYGRDDPSLGAMVKYDEQVRREAKRLSPILAS
LTVGEPDSRAGPGEQLQDDAAPALAKQSSQTTEAASWDVFSSRRQSAVLVFQNDRSEQSE

Sequences:

>Translated_220_residues
MAGSFVDIAQTCAPMVKVETLAGIVSLESRFQPFAVRINSGPPLPAQPVSKAEAIEVATSLIADRQDIQIGLGGIGIEQL
QKLKLSVADAFDPCLNLKATATLLDGYLRVAVRAGDDPALAETVMLQSYYGRDDPSLGAMVKYDEQVRREAKRLSPILAS
LTVGEPDSRAGPGEQLQDDAAPALAKQSSQTTEAASWDVFSSRRQSAVLVFQNDRSEQSE
>Mature_219_residues
AGSFVDIAQTCAPMVKVETLAGIVSLESRFQPFAVRINSGPPLPAQPVSKAEAIEVATSLIADRQDIQIGLGGIGIEQLQ
KLKLSVADAFDPCLNLKATATLLDGYLRVAVRAGDDPALAETVMLQSYYGRDDPSLGAMVKYDEQVRREAKRLSPILASL
TVGEPDSRAGPGEQLQDDAAPALAKQSSQTTEAASWDVFSSRRQSAVLVFQNDRSEQSE

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 23520; Mature: 23389

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSFVDIAQTCAPMVKVETLAGIVSLESRFQPFAVRINSGPPLPAQPVSKAEAIEVATS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LIADRQDIQIGLGGIGIEQLQKLKLSVADAFDPCLNLKATATLLDGYLRVAVRAGDDPAL
HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCHHH
AETVMLQSYYGRDDPSLGAMVKYDEQVRREAKRLSPILASLTVGEPDSRAGPGEQLQDDA
HHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
APALAKQSSQTTEAASWDVFSSRRQSAVLVFQNDRSEQSE
HHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
AGSFVDIAQTCAPMVKVETLAGIVSLESRFQPFAVRINSGPPLPAQPVSKAEAIEVATS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LIADRQDIQIGLGGIGIEQLQKLKLSVADAFDPCLNLKATATLLDGYLRVAVRAGDDPAL
HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCHHH
AETVMLQSYYGRDDPSLGAMVKYDEQVRREAKRLSPILASLTVGEPDSRAGPGEQLQDDA
HHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
APALAKQSSQTTEAASWDVFSSRRQSAVLVFQNDRSEQSE
HHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]