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The map label for this gene is virB5c [H]

Identifier: 190895234

GI number: 190895234

Start: 996061

End: 996762

Strand: Reverse

Name: virB5c [H]

Synonym: RHECIAT_PC0000907

Alternate gene names: 190895234

Gene position: 996762-996061 (Counterclockwise)

Preceding gene: 190895235

Following gene: 190895233

Centisome position: 91.32

GC content: 60.11

Gene sequence:

>702_bases
ATGATCCGAACAGGAACGATGCGCCCATTGTCTGTATCTGCCGCTCTTTTGGCGTCGGCGATGCTGGCATCGGCCCAGGG
CATCCCGGTCATCGATCAGACATCGATCGCCAAGCAGATCGAAAGCATCACGCAGCTGAAGTCCCAGCTCGACGCCTTGA
ACCAGCAGCTCCAGCAAGCCCAGCAGCTCTATGGATCGCTGAACAAGATCACCAATATGGCCGACATCGCCAGCCTGCTG
AACGATCCGTCGATCCGCAAGGCGCTGCCGCAGGACTTCAACGCGATCGAGGGGCTGTTCAAAGGTTCCGGCAGCGGCGT
CTTCGGCAATTCCGCTTCGAAATTCCTGCAGGACAATTCCACCTATCGCACCGATGCCGACGATTTCTATGCGCGGGAGC
TGTCGCGCATCCAGAACCAGAACGCCGGGCAGATGAGCTTGGGACAGCAGATCTACGATGCCGCGACCAAGCGCATCGAC
GGTATCGACGAGCTTCGCCAGAAGATCTCAAGTGCGGCCGACGCAAAGGACATTGCCGACCTTCAAGCGCGCCTGCAGGC
CGAAACCGCCTTCCTGCAAACCGACCTCCTGCGCATGCAGGGCCTGCAGATGGTCCAGCAGGCCCAGGTGCAGGTCGATG
AGCAGCGCAAGGCCGAGGATTGGCGCAAGCGCATGGACACGATGGGAGCGGCACTCAAATGA

Upstream 100 bases:

>100_bases
GCCGGACGGCCAATGTCGAGCTCGCCGATGCGATCCGATCGGAGATCGGCGAGGGACCGGAGGACTGGCTCACCGTGTTT
CATCAGAGGAGGAAGACAGC

Downstream 100 bases:

>100_bases
GGTGGTTTCTTTCCGGCGTGGCCACGCTCCTCCTGGCGGCCTGCTCCCAGCAGGCGGAGAAGATTTACACTGTCGACGAG
CTCATGGCCGATGATGTGCT

Product: transport secretion system IV protein, VirB5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIRTGTMRPLSVSAALLASAMLASAQGIPVIDQTSIAKQIESITQLKSQLDALNQQLQQAQQLYGSLNKITNMADIASLL
NDPSIRKALPQDFNAIEGLFKGSGSGVFGNSASKFLQDNSTYRTDADDFYARELSRIQNQNAGQMSLGQQIYDAATKRID
GIDELRQKISSAADAKDIADLQARLQAETAFLQTDLLRMQGLQMVQQAQVQVDEQRKAEDWRKRMDTMGAALK

Sequences:

>Translated_233_residues
MIRTGTMRPLSVSAALLASAMLASAQGIPVIDQTSIAKQIESITQLKSQLDALNQQLQQAQQLYGSLNKITNMADIASLL
NDPSIRKALPQDFNAIEGLFKGSGSGVFGNSASKFLQDNSTYRTDADDFYARELSRIQNQNAGQMSLGQQIYDAATKRID
GIDELRQKISSAADAKDIADLQARLQAETAFLQTDLLRMQGLQMVQQAQVQVDEQRKAEDWRKRMDTMGAALK
>Mature_233_residues
MIRTGTMRPLSVSAALLASAMLASAQGIPVIDQTSIAKQIESITQLKSQLDALNQQLQQAQQLYGSLNKITNMADIASLL
NDPSIRKALPQDFNAIEGLFKGSGSGVFGNSASKFLQDNSTYRTDADDFYARELSRIQNQNAGQMSLGQQIYDAATKRID
GIDELRQKISSAADAKDIADLQARLQAETAFLQTDLLRMQGLQMVQQAQVQVDEQRKAEDWRKRMDTMGAALK

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012991
- InterPro:   IPR014158
- InterPro:   IPR023220 [H]

Pfam domain/function: PF07996 T4SS [H]

EC number: NA

Molecular weight: Translated: 25586; Mature: 25586

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTGTMRPLSVSAALLASAMLASAQGIPVIDQTSIAKQIESITQLKSQLDALNQQLQQA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQLYGSLNKITNMADIASLLNDPSIRKALPQDFNAIEGLFKGSGSGVFGNSASKFLQDNS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
TYRTDADDFYARELSRIQNQNAGQMSLGQQIYDAATKRIDGIDELRQKISSAADAKDIAD
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH
LQARLQAETAFLQTDLLRMQGLQMVQQAQVQVDEQRKAEDWRKRMDTMGAALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRTGTMRPLSVSAALLASAMLASAQGIPVIDQTSIAKQIESITQLKSQLDALNQQLQQA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQLYGSLNKITNMADIASLLNDPSIRKALPQDFNAIEGLFKGSGSGVFGNSASKFLQDNS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
TYRTDADDFYARELSRIQNQNAGQMSLGQQIYDAATKRIDGIDELRQKISSAADAKDIAD
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH
LQARLQAETAFLQTDLLRMQGLQMVQQAQVQVDEQRKAEDWRKRMDTMGAALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]