| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190895194
Identifier: 190895194
GI number: 190895194
Start: 959878
End: 960747
Strand: Reverse
Name: 190895194
Synonym: RHECIAT_PC0000867
Alternate gene names: NA
Gene position: 960747-959878 (Counterclockwise)
Preceding gene: 190895195
Following gene: 190895193
Centisome position: 88.02
GC content: 53.45
Gene sequence:
>870_bases ATGGCGTCTACTTTACCAGCGGTAAAATTCGTGTGCTCCGGATGTGGGGCTACTATTCACACAGTCCTTGCGGAGGTGCC GGCCTACGACCTCATGGCGGATCGCGAATCAGACGCGCAGGGTTTTGTTGAACAAGCCGTTGAGTGCTCCGAGTGTGATC GACAGCTTTCCGTTGGGATCAGAAATACGGGCGCAGGTTTGGTAGCCGCACTTCAGGATGAAAACACACCGGTTGAAGTG ATCGATGATCCCACTCAGCGTCCAGATGACGAATGGGATACTGAAGCCTATCAGCGCGAAAACCTGCCAAATGACCCTGG GCAGATCTTCAAGTTTGCGACCTACGACATCGACTTTATTGCCGGCGAGGTGGAGAGCGGAGGCCATGGATCGGTTGCTG CGCTGAACCGCATGTTGCTGGTCCAATACTTTTCCGCGATCGAGGCGTATCTTAGCGACCGCCTGATCCGCCTGGTGCTC GACAGTCCCAAATCCTTGGCAGCACTCGTTATCGGCAACAAGGAATGGGCCGGCGAAAAGATTAGTGTCGTTGAGCTTGC ATCAAATGCACATGCTTTTCGCGACTGGGTGCACACGCGCTTGCGCGAGCTGATGTACCACAACTTCGTGAAGATCGATC AATATTATCGAAGTGCGCTCGGCTCTACGATATTTCCCGATGAAGCGACGAAAAAAGTACTTATGGAGTTCGTTCCTGTA CGGCATGATTGCGTCCACCGTTACGGTCGCGATCACGACGGTCGAGAGCGTACAATAAGTAAAGTAGATCTTGATAAGCT GGGTAGCGCCCTTGAAAACATGGTCGCCCACCTTGAGGGATTGTTTGTCCGGCGGCGCACAAACGGGTGA
Upstream 100 bases:
>100_bases CTGCCAGAGAGTCTCGAAGCCGTATGTTCTTTCCAAAACGAGCTGGCGCAAATAGCTTTCGGACGCGATAGTGGCACTTG AGTAAAACGAAAGGGGAGGC
Downstream 100 bases:
>100_bases GGCATTCTTGGGGTCTGCATGGCAAACTCCGGGATAGGTGACTGCGCGAGGCCAAGATGTGGGGGCGGAGAAATGTCCAT TCATACCGTGATCGTCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MASTLPAVKFVCSGCGATIHTVLAEVPAYDLMADRESDAQGFVEQAVECSECDRQLSVGIRNTGAGLVAALQDENTPVEV IDDPTQRPDDEWDTEAYQRENLPNDPGQIFKFATYDIDFIAGEVESGGHGSVAALNRMLLVQYFSAIEAYLSDRLIRLVL DSPKSLAALVIGNKEWAGEKISVVELASNAHAFRDWVHTRLRELMYHNFVKIDQYYRSALGSTIFPDEATKKVLMEFVPV RHDCVHRYGRDHDGRERTISKVDLDKLGSALENMVAHLEGLFVRRRTNG
Sequences:
>Translated_289_residues MASTLPAVKFVCSGCGATIHTVLAEVPAYDLMADRESDAQGFVEQAVECSECDRQLSVGIRNTGAGLVAALQDENTPVEV IDDPTQRPDDEWDTEAYQRENLPNDPGQIFKFATYDIDFIAGEVESGGHGSVAALNRMLLVQYFSAIEAYLSDRLIRLVL DSPKSLAALVIGNKEWAGEKISVVELASNAHAFRDWVHTRLRELMYHNFVKIDQYYRSALGSTIFPDEATKKVLMEFVPV RHDCVHRYGRDHDGRERTISKVDLDKLGSALENMVAHLEGLFVRRRTNG >Mature_288_residues ASTLPAVKFVCSGCGATIHTVLAEVPAYDLMADRESDAQGFVEQAVECSECDRQLSVGIRNTGAGLVAALQDENTPVEVI DDPTQRPDDEWDTEAYQRENLPNDPGQIFKFATYDIDFIAGEVESGGHGSVAALNRMLLVQYFSAIEAYLSDRLIRLVLD SPKSLAALVIGNKEWAGEKISVVELASNAHAFRDWVHTRLRELMYHNFVKIDQYYRSALGSTIFPDEATKKVLMEFVPVR HDCVHRYGRDHDGRERTISKVDLDKLGSALENMVAHLEGLFVRRRTNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32220; Mature: 32088
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTLPAVKFVCSGCGATIHTVLAEVPAYDLMADRESDAQGFVEQAVECSECDRQLSVGI CCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC RNTGAGLVAALQDENTPVEVIDDPTQRPDDEWDTEAYQRENLPNDPGQIFKFATYDIDFI CCCCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHEEEHHEECHHHE AGEVESGGHGSVAALNRMLLVQYFSAIEAYLSDRLIRLVLDSPKSLAALVIGNKEWAGEK ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC ISVVELASNAHAFRDWVHTRLRELMYHNFVKIDQYYRSALGSTIFPDEATKKVLMEFVPV EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCH RHDCVHRYGRDHDGRERTISKVDLDKLGSALENMVAHLEGLFVRRRTNG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASTLPAVKFVCSGCGATIHTVLAEVPAYDLMADRESDAQGFVEQAVECSECDRQLSVGI CCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC RNTGAGLVAALQDENTPVEVIDDPTQRPDDEWDTEAYQRENLPNDPGQIFKFATYDIDFI CCCCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHEEEHHEECHHHE AGEVESGGHGSVAALNRMLLVQYFSAIEAYLSDRLIRLVLDSPKSLAALVIGNKEWAGEK ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC ISVVELASNAHAFRDWVHTRLRELMYHNFVKIDQYYRSALGSTIFPDEATKKVLMEFVPV EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCH RHDCVHRYGRDHDGRERTISKVDLDKLGSALENMVAHLEGLFVRRRTNG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA