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The map label for this gene is dcyD [H]

Identifier: 190895136

GI number: 190895136

Start: 868660

End: 869691

Strand: Reverse

Name: dcyD [H]

Synonym: RHECIAT_PC0000806

Alternate gene names: 190895136

Gene position: 869691-868660 (Counterclockwise)

Preceding gene: 190895138

Following gene: 190895135

Centisome position: 79.68

GC content: 58.14

Gene sequence:

>1032_bases
ATGAGTGCTCTCGAAACTCTTGGACGCGTGCCGCGTCTCGATCTGCGTGGGTTTGTTTCGCCGGTACAGCGTCTCGAACG
CTTCAGTGAGGCGATCGGAGTCGAAGTCTGGTGCAAGCGGGACGACATCGGCTCTGTCGGTCTCGCGGGCAACAAGGTCC
GCAAGCTGGAGGTCGAACTGGCTCATGCCGTCGCTTGCGGTGCAACGCACCTAGTCGCGGAAGGCTCTCGCCTTTCAAAC
GCGACGCGCGCGGTGGCCGCTGCCAGCGCTGCTCTCGGACTGAAATGCACACTGCTCCTATGTCATGACGAGCCGCACGA
ACCTGTCGGCAATCTGATGCTTGATGGTCTTTTCGGCGCCGATCTTCGATTTGTGGGCGATGTGAGCTGGACGGATCTAG
CTCGACATTCAGTGTCCGTCGTCAGTGAGCTCGAACAATCCGGAGAACGCGTTTATCGACTTCCCATCGGATGTGCTTCT
GAACGCAGTTGCTTGGGGTTTGCCCTGGCATATGGTGAACTTTGCCAGCAAATGCGCGAGCACGGACGCAATGTCGGGAC
AATCGTCCATGCAAGCTCGTCGGGCGGAACCCATGCGGGGCTCGTCCTCGGGAATGCGCTCCACGGTTTTGAGACCGACA
TTCGTGGCATTGTCGTCGCGGAGGACGTCTATCCTGACGTAGTTGGCACATATCTTTCCTTCGCACGCGGCGGCGCACGC
CTTATCGATGCAGAAGTCGAATTGACGCGAGATCATATCAACGTCACGCAAGCATATGTTGGTGAGGGATATGGACTGCC
CGCTGACGGCATATATGAGGCGATCGATTTGCTCGCGACGAAAGAGGGCTTGCTGGTCGATCCTGTCTATAGCGGGAAGA
CGATCGCGGCGATCATCGATCTTGCCGCGAAGGGTGAGCTAAACGGCCCTGTTGTCTTCTGGCATACAGGCGGGTATCAC
GCGCTCTTCGACCCTCGCTATGCAAAGCGAATCTGGTCGGCACTTGACCGCCTTGCAGGCATCGTGCTGTGA

Upstream 100 bases:

>100_bases
CGCCAGTCATTTTGTCAGAAGCCACGTATCCAGTGTCCGGATTTCAGTATCTGCCCTTATGTATAGGGTCCTCATCTGAC
GATGTGTAGAGGATAATCGG

Downstream 100 bases:

>100_bases
TGTCGCATTGGACCGCCGCGGAAATATAGTCATGAACTATCGGCCAAGGCGGGTAGTTCAGACACTCGCATCAGGAAGAG
CGAGGGGCGCTGGTTGCACT

Product: putative 1-aminocyclopropane-1-carboxylate deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSALETLGRVPRLDLRGFVSPVQRLERFSEAIGVEVWCKRDDIGSVGLAGNKVRKLEVELAHAVACGATHLVAEGSRLSN
ATRAVAAASAALGLKCTLLLCHDEPHEPVGNLMLDGLFGADLRFVGDVSWTDLARHSVSVVSELEQSGERVYRLPIGCAS
ERSCLGFALAYGELCQQMREHGRNVGTIVHASSSGGTHAGLVLGNALHGFETDIRGIVVAEDVYPDVVGTYLSFARGGAR
LIDAEVELTRDHINVTQAYVGEGYGLPADGIYEAIDLLATKEGLLVDPVYSGKTIAAIIDLAAKGELNGPVVFWHTGGYH
ALFDPRYAKRIWSALDRLAGIVL

Sequences:

>Translated_343_residues
MSALETLGRVPRLDLRGFVSPVQRLERFSEAIGVEVWCKRDDIGSVGLAGNKVRKLEVELAHAVACGATHLVAEGSRLSN
ATRAVAAASAALGLKCTLLLCHDEPHEPVGNLMLDGLFGADLRFVGDVSWTDLARHSVSVVSELEQSGERVYRLPIGCAS
ERSCLGFALAYGELCQQMREHGRNVGTIVHASSSGGTHAGLVLGNALHGFETDIRGIVVAEDVYPDVVGTYLSFARGGAR
LIDAEVELTRDHINVTQAYVGEGYGLPADGIYEAIDLLATKEGLLVDPVYSGKTIAAIIDLAAKGELNGPVVFWHTGGYH
ALFDPRYAKRIWSALDRLAGIVL
>Mature_342_residues
SALETLGRVPRLDLRGFVSPVQRLERFSEAIGVEVWCKRDDIGSVGLAGNKVRKLEVELAHAVACGATHLVAEGSRLSNA
TRAVAAASAALGLKCTLLLCHDEPHEPVGNLMLDGLFGADLRFVGDVSWTDLARHSVSVVSELEQSGERVYRLPIGCASE
RSCLGFALAYGELCQQMREHGRNVGTIVHASSSGGTHAGLVLGNALHGFETDIRGIVVAEDVYPDVVGTYLSFARGGARL
IDAEVELTRDHINVTQAYVGEGYGLPADGIYEAIDLLATKEGLLVDPVYSGKTIAAIIDLAAKGELNGPVVFWHTGGYHA
LFDPRYAKRIWSALDRLAGIVL

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=331, Percent_Identity=36.5558912386707, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 36640; Mature: 36509

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALETLGRVPRLDLRGFVSPVQRLERFSEAIGVEVWCKRDDIGSVGLAGNKVRKLEVEL
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHH
AHAVACGATHLVAEGSRLSNATRAVAAASAALGLKCTLLLCHDEPHEPVGNLMLDGLFGA
HHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCC
DLRFVGDVSWTDLARHSVSVVSELEQSGERVYRLPIGCASERSCLGFALAYGELCQQMRE
CEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
HGRNVGTIVHASSSGGTHAGLVLGNALHGFETDIRGIVVAEDVYPDVVGTYLSFARGGAR
HCCCEEEEEEECCCCCCEEHHEECCHHHCCCCCCCEEEEECHHCHHHHHHHHHHHCCCCE
LIDAEVELTRDHINVTQAYVGEGYGLPADGIYEAIDLLATKEGLLVDPVYSGKTIAAIID
EEECCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHH
LAAKGELNGPVVFWHTGGYHALFDPRYAKRIWSALDRLAGIVL
HHHCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SALETLGRVPRLDLRGFVSPVQRLERFSEAIGVEVWCKRDDIGSVGLAGNKVRKLEVEL
CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHH
AHAVACGATHLVAEGSRLSNATRAVAAASAALGLKCTLLLCHDEPHEPVGNLMLDGLFGA
HHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCC
DLRFVGDVSWTDLARHSVSVVSELEQSGERVYRLPIGCASERSCLGFALAYGELCQQMRE
CEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
HGRNVGTIVHASSSGGTHAGLVLGNALHGFETDIRGIVVAEDVYPDVVGTYLSFARGGAR
HCCCEEEEEEECCCCCCEEHHEECCHHHCCCCCCCEEEEECHHCHHHHHHHHHHHCCCCE
LIDAEVELTRDHINVTQAYVGEGYGLPADGIYEAIDLLATKEGLLVDPVYSGKTIAAIID
EEECCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHH
LAAKGELNGPVVFWHTGGYHALFDPRYAKRIWSALDRLAGIVL
HHHCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA