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The map label for this gene is yhjC [C]

Identifier: 190895100

GI number: 190895100

Start: 826680

End: 827654

Strand: Reverse

Name: yhjC [C]

Synonym: RHECIAT_PC0000770

Alternate gene names: 190895100

Gene position: 827654-826680 (Counterclockwise)

Preceding gene: 190895120

Following gene: 190895098

Centisome position: 75.83

GC content: 59.69

Gene sequence:

>975_bases
GTGACAGCGTTGGAAGACTTGAATGACCTGATGCTGTTTGCCGCTGTCGTGCACCATGGAAGCTTCTCCGCTGCGGCATT
GGCACACGGACTGCCCAAATCTAAGGTAAGTCGCCGTGTCGCCGGCCTGGAGCGACGACTGGGCGTGCGTCTTCTGCAGC
GCTCGACGCGGGCTCTCCACGTGACGGAAGTCGGGCAAGCACTCCTGCCGCACTGCGAGTCCATGGCGGAAAGCGCCCAG
GCGGCACTCGAAGTCGCAGCCTCAGCAGGAGAACATCCCTCAGGTCGGCTGAAGGTCAGTTGTCCGATTGGTGTCGCGCA
CATCTACCTCGCACCGGTGTTGGGCAAATTCCTGAAGGCACATCCCGCAGTCCGGTTTGAACTCGATCTGACGAATCGGC
GCGTGGATGTGATCGCAGAAGGCTATGACGTCGCCCTCAGGATCAGATCGAGTCTTGACGATTCCAATCTTGTCGTTCGC
AGTTTGGGAACGAGTGAGCAGATGCTTGTGGCAAGCCCGGAATTCATAGCCACCCACGGTCCTTTCGGCAGCGCGGATTC
TTTGCAGCGGAAGCCAGGGGTCGGGCCTGCCGGCGTGAGAGGCGAGAGGAACTTCTGGAGTTTGCTGAAGCCGGATGGTG
TTTCCATCGACATCGAATATCTGCCGACGCTCATGACTGACGATGTCTATGTGCTGTGTCAGGCTGCGTTAGCCGGAATT
GGTGTCGCACGTCTGCCGGTCAATATTTGCGGAGACGCCATTCGCGACGGCCGCCTGGTGAAGGTCTTGCCGCATTATCG
ATTGCACGCGCACGGTGTTCATGCCGTGTTTCCGTCCCGCAGGGGCCTCGTGCCAGCGGTGAGGGCTTTCCTCGACTTCC
TGGCCGAAGAGCTCCCGGGGATGCTTGCGGCGGTGACTGGGGGATATGACGATGGCTATAGACCAGGTAGCCTCGGTTCA
AATCGGACATCGTGA

Upstream 100 bases:

>100_bases
CCGATGAGTTCGATTGCAAGATAGCGGGTTGCCAAATGTCGCAGTAGGACTATGAATCGGGACTGATTGTTCTATGGAAG
CAACAATGCGATAATGCGGG

Downstream 100 bases:

>100_bases
CCGCTTGGTGTAGACGAGGCCTGTAGGTTCGGCCCGCATTCAGCTGTCATCCAGGATGACGCAATAAACAGGTCCGTTGT
CATATACGACGCGGTGTTGA

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTALEDLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVGQALLPHCESMAESAQ
AALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVR
SLGTSEQMLVASPEFIATHGPFGSADSLQRKPGVGPAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGI
GVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEELPGMLAAVTGGYDDGYRPGSLGS
NRTS

Sequences:

>Translated_324_residues
MTALEDLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVGQALLPHCESMAESAQ
AALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVR
SLGTSEQMLVASPEFIATHGPFGSADSLQRKPGVGPAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGI
GVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEELPGMLAAVTGGYDDGYRPGSLGS
NRTS
>Mature_323_residues
TALEDLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVGQALLPHCESMAESAQA
ALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRS
LGTSEQMLVASPEFIATHGPFGSADSLQRKPGVGPAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGIG
VARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEELPGMLAAVTGGYDDGYRPGSLGSN
RTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=30.5647840531561, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.0819112627986, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=30.6122448979592, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=27.9863481228669, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=27.2413793103448, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=309, Percent_Identity=31.7152103559871, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789440, Length=310, Percent_Identity=25.8064516129032, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=28.125, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788706, Length=311, Percent_Identity=24.7588424437299, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786448, Length=138, Percent_Identity=31.1594202898551, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34623; Mature: 34492

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALEDLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALH
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
VTEVGQALLPHCESMAESAQAALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
HPAVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHG
CCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCCEEEECCCCEEECC
PFGSADSLQRKPGVGPAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGI
CCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHCCCHHHCCHHHHHHHHHHHHC
GVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEELPG
CHHHCCHHHHHHHHCCCCEEEECCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCH
MLAAVTGGYDDGYRPGSLGSNRTS
HEEEHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TALEDLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALH
CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
VTEVGQALLPHCESMAESAQAALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
HPAVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHG
CCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCCEEEECCCCEEECC
PFGSADSLQRKPGVGPAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGI
CCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHCCCHHHCCHHHHHHHHHHHHC
GVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEELPG
CHHHCCHHHHHHHHCCCCEEEECCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCH
MLAAVTGGYDDGYRPGSLGSNRTS
HEEEHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]