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The map label for this gene is soxC [H]

Identifier: 190895082

GI number: 190895082

Start: 808202

End: 809017

Strand: Reverse

Name: soxC [H]

Synonym: RHECIAT_PC0000751

Alternate gene names: 190895082

Gene position: 809017-808202 (Counterclockwise)

Preceding gene: 190895084

Following gene: 190895081

Centisome position: 74.12

GC content: 62.13

Gene sequence:

>816_bases
GTGGGACAGCGCGACTTCACGCGGCGAACGAGGCTTGTGAGCGATGAAGGCGGTGCTTTCGTCGAGGGGCGCAAGTTCTA
TTGCACCGGTGCGCTTTATGCGCATTGGATCCCAACTCTTGCGGTCGCGGTCGAAGACGGGCTTGAGACCAGCTATCTGG
TTTTCATTCCCCGCAACGCGCCCGGTGTTACCATCACCGACGACTGGGATGGCTTCGGTCAGCGTGTTACCGGCAGCGGC
TCGGTCCAGTTTGAGCATGTGCAGGTCAAACCCGAGTGGATCGTACCGTTCAAGGCGTCGTTCGACCGGCCGACGACGAT
AGGCCCACAGGCACAGCTCATGCATGCCGCGATCGATCTCGGCATCGGGCAGGGCGCCTATCGCGAGATGCTGCGGTTCA
TCAGGGAGCGCTCGCGTCCGTGGATTGACGCGAAGGTCGAGCGGGCCGTCGATGATCCGCTGACCCTTTATGGCGTCGGC
GAGGTCAAGGTGCGGCTGCGGGCGGCCCAAGCCTTGCTCGCCAGAGCGGCGGCGCTGGTCGACACGGCACAGTGCGACAT
GACGGAACAGACTGTCGCCGCGGCATCTGTTGCAGTGGCGGAGGCGAAAATCCTATCGACAAAGGCGGGGCTATTGGCCG
GCAGCAAGCTGTTCGAACTTTCGGGAACCTCGTCCACGCTCTCGGAGGACAACCTCGACCAATACTGGCGCAATGTGCGA
ACCCACACGCTGCACGACCCGGTTCGCTGGAAATACCAGGCGATCGGAAACTACTATCTGAGCGGAAAGCTACCGCCACG
TCACGGCGCAATCTGA

Upstream 100 bases:

>100_bases
CGCCCTTGAAGTACTGCGGGTCGGCGGCAGCGATGAGCAGAAGCGATTCTTCTACGGCCGAGTCCTTGCAGGAGAACGGT
TTGGCAACGCTCTGGCGGAA

Downstream 100 bases:

>100_bases
AGGCAAACGGAGGCGGAGGGAGACCTTGGCTCAGAAGAAGCAGATCTTACTAAACGCGTTCAACATGAACTCTGTCGGCC
ACATCAACCACGGGCTCTGG

Product: putative acy-CoA dehydrogenase

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MGQRDFTRRTRLVSDEGGAFVEGRKFYCTGALYAHWIPTLAVAVEDGLETSYLVFIPRNAPGVTITDDWDGFGQRVTGSG
SVQFEHVQVKPEWIVPFKASFDRPTTIGPQAQLMHAAIDLGIGQGAYREMLRFIRERSRPWIDAKVERAVDDPLTLYGVG
EVKVRLRAAQALLARAAALVDTAQCDMTEQTVAAASVAVAEAKILSTKAGLLAGSKLFELSGTSSTLSEDNLDQYWRNVR
THTLHDPVRWKYQAIGNYYLSGKLPPRHGAI

Sequences:

>Translated_271_residues
MGQRDFTRRTRLVSDEGGAFVEGRKFYCTGALYAHWIPTLAVAVEDGLETSYLVFIPRNAPGVTITDDWDGFGQRVTGSG
SVQFEHVQVKPEWIVPFKASFDRPTTIGPQAQLMHAAIDLGIGQGAYREMLRFIRERSRPWIDAKVERAVDDPLTLYGVG
EVKVRLRAAQALLARAAALVDTAQCDMTEQTVAAASVAVAEAKILSTKAGLLAGSKLFELSGTSSTLSEDNLDQYWRNVR
THTLHDPVRWKYQAIGNYYLSGKLPPRHGAI
>Mature_270_residues
GQRDFTRRTRLVSDEGGAFVEGRKFYCTGALYAHWIPTLAVAVEDGLETSYLVFIPRNAPGVTITDDWDGFGQRVTGSGS
VQFEHVQVKPEWIVPFKASFDRPTTIGPQAQLMHAAIDLGIGQGAYREMLRFIRERSRPWIDAKVERAVDDPLTLYGVGE
VKVRLRAAQALLARAAALVDTAQCDMTEQTVAAASVAVAEAKILSTKAGLLAGSKLFELSGTSSTLSEDNLDQYWRNVRT
HTLHDPVRWKYQAIGNYYLSGKLPPRHGAI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 29910; Mature: 29779

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQRDFTRRTRLVSDEGGAFVEGRKFYCTGALYAHWIPTLAVAVEDGLETSYLVFIPRNA
CCCCHHHHHHHEECCCCCCEEECCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
PGVTITDDWDGFGQRVTGSGSVQFEHVQVKPEWIVPFKASFDRPTTIGPQAQLMHAAIDL
CCCEEECCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHC
GIGQGAYREMLRFIRERSRPWIDAKVERAVDDPLTLYGVGEVKVRLRAAQALLARAAALV
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCHHEEHHHHHHHHHHHHHHHH
DTAQCDMTEQTVAAASVAVAEAKILSTKAGLLAGSKLFELSGTSSTLSEDNLDQYWRNVR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCC
THTLHDPVRWKYQAIGNYYLSGKLPPRHGAI
CCCCCCCHHEEEEEECCEEEECCCCCCCCCC
>Mature Secondary Structure 
GQRDFTRRTRLVSDEGGAFVEGRKFYCTGALYAHWIPTLAVAVEDGLETSYLVFIPRNA
CCCHHHHHHHEECCCCCCEEECCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
PGVTITDDWDGFGQRVTGSGSVQFEHVQVKPEWIVPFKASFDRPTTIGPQAQLMHAAIDL
CCCEEECCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHC
GIGQGAYREMLRFIRERSRPWIDAKVERAVDDPLTLYGVGEVKVRLRAAQALLARAAALV
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCHHEEHHHHHHHHHHHHHHHH
DTAQCDMTEQTVAAASVAVAEAKILSTKAGLLAGSKLFELSGTSSTLSEDNLDQYWRNVR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCC
THTLHDPVRWKYQAIGNYYLSGKLPPRHGAI
CCCCCCCHHEEEEEECCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]