| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is 190894943
Identifier: 190894943
GI number: 190894943
Start: 661806
End: 662645
Strand: Reverse
Name: 190894943
Synonym: RHECIAT_PC0000608
Alternate gene names: NA
Gene position: 662645-661806 (Counterclockwise)
Preceding gene: 190894944
Following gene: 190894940
Centisome position: 60.71
GC content: 57.98
Gene sequence:
>840_bases ATGAAGCGGTTTTCGAACGTCCGAACCTTGTTCTTCGCGCCGGTCGTCCTGATCGGGCTTGGCGCACCGGCGGCATTGGC GGGGCAGAATGAATGCGCCGGCCGTGCGGCAGACATCATTCGGCATGCATATCCGAGCGCAACAAAAGCCGAAGATGGTA CTATTCTGTTCGAGGGGGCAACCATCACGCTGTCCAGGAGCGACAGTGTTGATGGCGATCCGCATGCGGTGATCTGCCGG GTTTGGCCGGCTCAGCCTCAGCTGACGCTGATTGCGGTTCCTCTGATGACAGAGCAGTCGGATGCGGAAAATGAAGGCGA TATCGAACTGCTCGTCGTCGACAGCACCAACCTGCAAGTAAGGCAGCGGCTGCGTCTTGACGGCTTCATGTCCGACGACG CCGTTCGTGTGCGAAGCGTCGCCCTCGACACCGCACGCTATCAGCTCGCTCCGAAGAGAACGGCTTTCGGCCTGCGTGTT TCGCGGGAAGGCAGTTCGCGCGCCAACCCATTCGGTGAAACGACCTTATGGCTCTTCGCGATCGAAGGTGATGGGCTGAA GCCGATTCTTGACAACGTTGTCGTTCGCGAAAGTCACGGAGAATGGGATACCGTCTGCGCCGGTGAGTTTAGCGAAACCA CGCGCACGCTTTCGATGGTTCCATCGGCGAAAGACACCGTTGCCGACATCATTGTCACCGAGAAAACGACGACATCCGTC AACAGGGTCGGAACGGATAATGATTGCAATAGCGAAGATAAGACGACGATCCGCAAACACCGGCTGCGGTACGACGGATC GGGATATGGCGTTCCCAAAGACCTGAAGCGGGTCGATTAG
Upstream 100 bases:
>100_bases GCGGAAGCGACCGTCTGGTCGAGAATTGACGTGCGCCTGGCTTTGGTGCGATCCGTATGCTGCAGTCACGCTTTGCATGG CTGGTTTGCTGAGGATCGAT
Downstream 100 bases:
>100_bases GAGGACTGACCGGGACGGGGTCCAGGCTGCGCATCGTGCACATGGCGAATTAGAGCTGGGGCAAATCTAGGCGCCCGAGC ATCCCGCCCTCGGCGCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MKRFSNVRTLFFAPVVLIGLGAPAALAGQNECAGRAADIIRHAYPSATKAEDGTILFEGATITLSRSDSVDGDPHAVICR VWPAQPQLTLIAVPLMTEQSDAENEGDIELLVVDSTNLQVRQRLRLDGFMSDDAVRVRSVALDTARYQLAPKRTAFGLRV SREGSSRANPFGETTLWLFAIEGDGLKPILDNVVVRESHGEWDTVCAGEFSETTRTLSMVPSAKDTVADIIVTEKTTTSV NRVGTDNDCNSEDKTTIRKHRLRYDGSGYGVPKDLKRVD
Sequences:
>Translated_279_residues MKRFSNVRTLFFAPVVLIGLGAPAALAGQNECAGRAADIIRHAYPSATKAEDGTILFEGATITLSRSDSVDGDPHAVICR VWPAQPQLTLIAVPLMTEQSDAENEGDIELLVVDSTNLQVRQRLRLDGFMSDDAVRVRSVALDTARYQLAPKRTAFGLRV SREGSSRANPFGETTLWLFAIEGDGLKPILDNVVVRESHGEWDTVCAGEFSETTRTLSMVPSAKDTVADIIVTEKTTTSV NRVGTDNDCNSEDKTTIRKHRLRYDGSGYGVPKDLKRVD >Mature_279_residues MKRFSNVRTLFFAPVVLIGLGAPAALAGQNECAGRAADIIRHAYPSATKAEDGTILFEGATITLSRSDSVDGDPHAVICR VWPAQPQLTLIAVPLMTEQSDAENEGDIELLVVDSTNLQVRQRLRLDGFMSDDAVRVRSVALDTARYQLAPKRTAFGLRV SREGSSRANPFGETTLWLFAIEGDGLKPILDNVVVRESHGEWDTVCAGEFSETTRTLSMVPSAKDTVADIIVTEKTTTSV NRVGTDNDCNSEDKTTIRKHRLRYDGSGYGVPKDLKRVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30452; Mature: 30452
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFSNVRTLFFAPVVLIGLGAPAALAGQNECAGRAADIIRHAYPSATKAEDGTILFEGA CCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECE TITLSRSDSVDGDPHAVICRVWPAQPQLTLIAVPLMTEQSDAENEGDIELLVVDSTNLQV EEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCHHH RQRLRLDGFMSDDAVRVRSVALDTARYQLAPKRTAFGLRVSREGSSRANPFGETTLWLFA HHHHHHCCCCCCCHHEEHHEEHHHHHEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEE IEGDGLKPILDNVVVRESHGEWDTVCAGEFSETTRTLSMVPSAKDTVADIIVTEKTTTSV EECCCCHHHHCCEEEECCCCCCCEEECCCCHHHHEEEEECCCCCCCEEEEEEECCCCCHH NRVGTDNDCNSEDKTTIRKHRLRYDGSGYGVPKDLKRVD HCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCHHHHHCC >Mature Secondary Structure MKRFSNVRTLFFAPVVLIGLGAPAALAGQNECAGRAADIIRHAYPSATKAEDGTILFEGA CCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECE TITLSRSDSVDGDPHAVICRVWPAQPQLTLIAVPLMTEQSDAENEGDIELLVVDSTNLQV EEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCHHH RQRLRLDGFMSDDAVRVRSVALDTARYQLAPKRTAFGLRVSREGSSRANPFGETTLWLFA HHHHHHCCCCCCCHHEEHHEEHHHHHEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEE IEGDGLKPILDNVVVRESHGEWDTVCAGEFSETTRTLSMVPSAKDTVADIIVTEKTTTSV EECCCCHHHHCCEEEECCCCCCCEEECCCCHHHHEEEEECCCCCCCEEEEEEECCCCCHH NRVGTDNDCNSEDKTTIRKHRLRYDGSGYGVPKDLKRVD HCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA