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The map label for this gene is yjiR [C]

Identifier: 190894717

GI number: 190894717

Start: 405078

End: 406463

Strand: Reverse

Name: yjiR [C]

Synonym: RHECIAT_PC0000382

Alternate gene names: 190894717

Gene position: 406463-405078 (Counterclockwise)

Preceding gene: 190894719

Following gene: 190894716

Centisome position: 37.24

GC content: 66.88

Gene sequence:

>1386_bases
ATGACAAAGTGGCGCCCCGATCCTTCGCAACTCCGCCGGCCGGCCTACCTCTCGCTCGCCGAGCAGATCGCCAACGCGAT
CACCGACGGCAAGCTCTCCGACGGCACGCAACTGCCGCCGCACCGCAAGCTGGCGGACGACCTGCATCTGTCGGTGCAGA
CGGTGAGCCGCGCCTATGACGAGCTCAGCCGCCGCGGGCTGATCTCCGGCGAGATCGGCCGCGGCAGCTTCGTCCAGACC
AGGCCGCGCGAGCCGGAGCCGCCTTATCTGCCGGAGCGGCTGGGCGAGGTGATTGATCTGTCGATCCTCAAGCCGGTCTG
CGAGCAGATCCATCTGGAAAGGCTGCGCCAGGCCTTCGGCTGGCTTTCGGAAAACCTGCCCTCCAGCTCGGCCCTGTCGT
TCCGACCGAACATGGTCTTTCCACGCCACCGCGCTGTCGCCACCGAATGGCTGGCGCGTTGCGGGCTGGAGGTGTCGCCG
CTGAACATCAGCCTGACGAATGGCGCGACCTCGGGCATGACGGTGGCGCTGATGAGCGTCGCGCCGCCCGGCTCGACGAT
TGCGACCGAGGCAATCAGCCACCATACGCTCGTGCCGCTCTGCGGTTATCTCGGCCTGCACCTCGAAGGGCTGCCAATCG
ACGAGCAAGGCATGATCCCGGAAGCGCTGGATGAAGCCTGCCGGACAGGGCCGATCCGGGCGATCTTCCTGCAGCCCTCG
GTGATCAATCCGATGGCGGCGCTGATGAGCGGCGAGCGACGGCAGGCGCTCGCCGCTATCGCCGCCAAGCATGACATTGC
GATCATCGAGAACGATATTCTCGGTCCGCTGGTCGAGAACAGGCCGCCGCCGATGGCGGCCTTCGCGCCGGAGCGGACGC
TCTACGTCACCAGCTTCACCAAGATCACGGTTCCCGGCCTCCGGATCGGTTATCTCGTCGCCCCCGACCGCTATGTCGCC
GCTGTCGCCAACCGGCATCTCGTCTCCAGCTGGATGGCGACGCCCGCCATGGCCGAGATCGCCAGCCGCTGGGTCAGTGA
AGGCACGGCGATGGAACTCGTCAACTGGCAGCGCCGCGCCCTTGCCGGCCGTCACGCGATCGCGGCGGAGATGCTGGCTG
GGCTCAGCTACCGGGCGCATCCGCAAAGCCTGCATGTATGGCTGCCGCTTTCCGGCCACCATGCGGAGGACGGGTTTGTC
GCCCAGGCAAGGCTGCGCGGGGTGGCGATCGCGCCCGGCAAATCGTTCCGCACCGCCGATCAGGGCTCGACGCCGGCCGT
GCGCATATCGCTCGGCTCGACGACGGAAAGTGAATTGCGGACCGGTCTTGGGATCGTTGCCGCATTGGCGCAGGGAAATC
CGGAAGAGCTGCTACTGGCGATTTGA

Upstream 100 bases:

>100_bases
GGTGCTTTCTTTAGAAAGAAATCATTCCAAACACAGGGAAAAGACAATGGGAGCGCATTTTGGCATTGTCAATTGAACTG
ATTTTCAGCAGTGTGAAATC

Downstream 100 bases:

>100_bases
CGCCATTGCCCTCCACTTGGGCTTTGCAGAATAATTGTCATGATATTATTTTGCGAATTGACATGATTTCGCTGGGCCGT
CATCGTTAGGACATTGCTTG

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSP
LNISLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLCGYLGLHLEGLPIDEQGMIPEALDEACRTGPIRAIFLQPS
VINPMAALMSGERRQALAAIAAKHDIAIIENDILGPLVENRPPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVA
AVANRHLVSSWMATPAMAEIASRWVSEGTAMELVNWQRRALAGRHAIAAEMLAGLSYRAHPQSLHVWLPLSGHHAEDGFV
AQARLRGVAIAPGKSFRTADQGSTPAVRISLGSTTESELRTGLGIVAALAQGNPEELLLAI

Sequences:

>Translated_461_residues
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSP
LNISLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLCGYLGLHLEGLPIDEQGMIPEALDEACRTGPIRAIFLQPS
VINPMAALMSGERRQALAAIAAKHDIAIIENDILGPLVENRPPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVA
AVANRHLVSSWMATPAMAEIASRWVSEGTAMELVNWQRRALAGRHAIAAEMLAGLSYRAHPQSLHVWLPLSGHHAEDGFV
AQARLRGVAIAPGKSFRTADQGSTPAVRISLGSTTESELRTGLGIVAALAQGNPEELLLAI
>Mature_460_residues
TKWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQTR
PREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPL
NISLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLCGYLGLHLEGLPIDEQGMIPEALDEACRTGPIRAIFLQPSV
INPMAALMSGERRQALAAIAAKHDIAIIENDILGPLVENRPPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVAA
VANRHLVSSWMATPAMAEIASRWVSEGTAMELVNWQRRALAGRHAIAAEMLAGLSYRAHPQSLHVWLPLSGHHAEDGFVA
QARLRGVAIAPGKSFRTADQGSTPAVRISLGSTTESELRTGLGIVAALAQGNPEELLLAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=22.0820189274448, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=22.0820189274448, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1790797, Length=358, Percent_Identity=28.4916201117318, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787710, Length=437, Percent_Identity=24.4851258581236, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49915; Mature: 49784

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYD
CCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELSRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPLNISLTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEECCEEEEECCCCCCCCEEEEEEE
APPGSTIATEAISHHTLVPLCGYLGLHLEGLPIDEQGMIPEALDEACRTGPIRAIFLQPS
CCCCCHHHHHHHHCCHHHHHHHHHHCEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC
VINPMAALMSGERRQALAAIAAKHDIAIIENDILGPLVENRPPPMAAFAPERTLYVTSFT
HHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCCEEECCCCEEEEEEEE
KITVPGLRIGYLVAPDRYVAAVANRHLVSSWMATPAMAEIASRWVSEGTAMELVNWQRRA
EEEECCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LAGRHAIAAEMLAGLSYRAHPQSLHVWLPLSGHHAEDGFVAQARLRGVAIAPGKSFRTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCEEHHHHCEEEECCCCCCCCCC
QGSTPAVRISLGSTTESELRTGLGIVAALAQGNPEELLLAI
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHEEEEC
>Mature Secondary Structure 
TKWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYD
CCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELSRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPLNISLTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEECCEEEEECCCCCCCCEEEEEEE
APPGSTIATEAISHHTLVPLCGYLGLHLEGLPIDEQGMIPEALDEACRTGPIRAIFLQPS
CCCCCHHHHHHHHCCHHHHHHHHHHCEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC
VINPMAALMSGERRQALAAIAAKHDIAIIENDILGPLVENRPPPMAAFAPERTLYVTSFT
HHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCCEEECCCCEEEEEEEE
KITVPGLRIGYLVAPDRYVAAVANRHLVSSWMATPAMAEIASRWVSEGTAMELVNWQRRA
EEEECCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LAGRHAIAAEMLAGLSYRAHPQSLHVWLPLSGHHAEDGFVAQARLRGVAIAPGKSFRTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCEEHHHHCEEEECCCCCCCCCC
QGSTPAVRISLGSTTESELRTGLGIVAALAQGNPEELLLAI
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]