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The map label for this gene is yckA [H]

Identifier: 190894697

GI number: 190894697

Start: 385125

End: 386453

Strand: Reverse

Name: yckA [H]

Synonym: RHECIAT_PC0000360

Alternate gene names: 190894697

Gene position: 386453-385125 (Counterclockwise)

Preceding gene: 190894698

Following gene: 190894696

Centisome position: 35.4

GC content: 59.59

Gene sequence:

>1329_bases
TTGAGCTACCATTTCGAATTCGGCTGGCTGCTTCAATATTACCCTGACATCATCAAGGGCATCGTGATCACCTTGGAGCT
TATCGCGGTCGGCGGGGTGCTTGGCATTTCGCTCGGCATTTTCTGCGCCTGGGTGCGGGCACTCGGCCCGGCTTGGCTGA
AACCGGTCGTTGCGGCCTATGTCGAGCTGATCCGCAACACGCCCTTCCTGATTCAGCTCTTTTTCATCTTTTTCGGTCTT
CCGTCGATCGGCCTCCATCTTTCCGAACTGACGGCGGCCAATCTTGCAATGGTCGTCAACCTCGGCGCCTATAGCTGCGA
AATTATCCGTGCCGGTATCCAGGCAACGCCGAAGGGCCAGTTCGAGGCGGGGCGAGAGCCTTGCCATGACGCGCTTCGAG
ACCTTCCGGCATGTGGTTCTCGTGCCTTCGCTGCAGCGCATCTGGCCAGCGCTGTCGTCGCAAGTCGTCATCGTCATGCT
CGGCTCGTCGGTCGTGTCGCAGATCGCCGCCGAAGATCTGACCTTTGCCGCAAACTTCATACAGTCGCGAACCTTCCGCG
CCTTCGAGGCCTACATCGTCTCGACTGCCATTTATCTCACGCTGGCGATCCTGCTCCGGCAGGTGCTGGCTGTCATCGGC
GGGTTGATTTTTCCAAGGAGAGCGGCGCTATGATCGAGTTCACCCTCTGGGATATACTGCGCAACCTGCTGCTCGCCACC
CGCTGGACGATCCTTCTCTCGCTCGTCTCCTTCATCGGCGGCGGCGCGGTCGGACTGGGGTTGCTGTTGCTGCGCATCAG
CAAAAACAAGGCGTGCAGGGCATTCGCGAAATATTATATCGAGCTCTTCCAGGGCACACCGTTGCTGATGCAGCTCTTCA
TTGCTTTTTTCGGTCTCGGTCTCTTCGGCATCGATGTGCCGGCCTGGCTTGCCGCGGGCATGGCGCTCATCCTGTGGACC
GCAGCCTTTCTCGCCGAAATATGGCGAGGCTGCGTCGAGTCGGTCGCCAGCGGCCAATGGGAAGCCTCCGCCAGCCTCGG
CATGGGGCGGTTGCAGCAGATGCGCTACGTCATCCTTCCGCAGGCGCTGAGGGTCGCCATCCCGCCCACGGTCGGCTTTT
CCGTCCAGATCATCAAGGGAACGGCGCTGACCTCGATCATCGGCTTCGTCGAATTGTCGAAAGCCGGCACCGTGGTCACC
AACGCCACCTTCCAGCCCTTCACTGTCTATGGGCTCGTCGCCCTCATCTACTTCGCCCTTTGCTGGCCCTTGTCAAAAAG
CAGCCAGATCCTGGAGAGGAAGCTCAATGTCGCTCATCGAAATCACTGA

Upstream 100 bases:

>100_bases
GCCGATCTGCCGTCCGATCTGTAAGCAAACCTGGTTCTTGCGCATGTCTCCTGCGGCCGCGGGATGACATGCGCCCCGTC
ACCGCAAGAGGGGACATTCC

Downstream 100 bases:

>100_bases
AGTCCGCAAAAGCTTTGGCGCCACCGAGGTGCTGAAAGGCATCAATCTCGATGTAGAGCCGGGGGAAGTCATCGCCATTA
TCGGCAAGAGCGGTTCGGGC

Product: putative amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSYHFEFGWLLQYYPDIIKGIVITLELIAVGGVLGISLGIFCAWVRALGPAWLKPVVAAYVELIRNTPFLIQLFFIFFGL
PSIGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQFEAGREPCHDALRDLPACGSRAFAAAHLASAVVASRHRHA
RLVGRVADRRRRSDLCRKLHTVANLPRLRGLHRLDCHLSHAGDPAPAGAGCHRRVDFSKESGAMIEFTLWDILRNLLLAT
RWTILLSLVSFIGGGAVGLGLLLLRISKNKACRAFAKYYIELFQGTPLLMQLFIAFFGLGLFGIDVPAWLAAGMALILWT
AAFLAEIWRGCVESVASGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIIKGTALTSIIGFVELSKAGTVVT
NATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH

Sequences:

>Translated_442_residues
MSYHFEFGWLLQYYPDIIKGIVITLELIAVGGVLGISLGIFCAWVRALGPAWLKPVVAAYVELIRNTPFLIQLFFIFFGL
PSIGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQFEAGREPCHDALRDLPACGSRAFAAAHLASAVVASRHRHA
RLVGRVADRRRRSDLCRKLHTVANLPRLRGLHRLDCHLSHAGDPAPAGAGCHRRVDFSKESGAMIEFTLWDILRNLLLAT
RWTILLSLVSFIGGGAVGLGLLLLRISKNKACRAFAKYYIELFQGTPLLMQLFIAFFGLGLFGIDVPAWLAAGMALILWT
AAFLAEIWRGCVESVASGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIIKGTALTSIIGFVELSKAGTVVT
NATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH
>Mature_441_residues
SYHFEFGWLLQYYPDIIKGIVITLELIAVGGVLGISLGIFCAWVRALGPAWLKPVVAAYVELIRNTPFLIQLFFIFFGLP
SIGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQFEAGREPCHDALRDLPACGSRAFAAAHLASAVVASRHRHAR
LVGRVADRRRRSDLCRKLHTVANLPRLRGLHRLDCHLSHAGDPAPAGAGCHRRVDFSKESGAMIEFTLWDILRNLLLATR
WTILLSLVSFIGGGAVGLGLLLLRISKNKACRAFAKYYIELFQGTPLLMQLFIAFFGLGLFGIDVPAWLAAGMALILWTA
AFLAEIWRGCVESVASGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIIKGTALTSIIGFVELSKAGTVVTN
ATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=38.8625592417062, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=33.0143540669856, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787030, Length=211, Percent_Identity=30.3317535545024, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788645, Length=197, Percent_Identity=31.4720812182741, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=35.036496350365, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787086, Length=224, Percent_Identity=26.3392857142857, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786874, Length=206, Percent_Identity=26.2135922330097, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.8181818181818, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786873, Length=200, Percent_Identity=24, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 48360; Mature: 48229

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYHFEFGWLLQYYPDIIKGIVITLELIAVGGVLGISLGIFCAWVRALGPAWLKPVVAAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VELIRNTPFLIQLFFIFFGLPSIGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQ
HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCC
FEAGREPCHDALRDLPACGSRAFAAAHLASAVVASRHRHARLVGRVADRRRRSDLCRKLH
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVANLPRLRGLHRLDCHLSHAGDPAPAGAGCHRRVDFSKESGAMIEFTLWDILRNLLLAT
HHHCCHHHCCCHHHHHECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
RWTILLSLVSFIGGGAVGLGLLLLRISKNKACRAFAKYYIELFQGTPLLMQLFIAFFGLG
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LFGIDVPAWLAAGMALILWTAAFLAEIWRGCVESVASGQWEASASLGMGRLQQMRYVILP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QALRVAIPPTVGFSVQIIKGTALTSIIGFVELSKAGTVVTNATFQPFTVYGLVALIYFAL
HHHHEECCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
CWPLSKSSQILERKLNVAHRNH
HCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYHFEFGWLLQYYPDIIKGIVITLELIAVGGVLGISLGIFCAWVRALGPAWLKPVVAAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VELIRNTPFLIQLFFIFFGLPSIGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQ
HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCC
FEAGREPCHDALRDLPACGSRAFAAAHLASAVVASRHRHARLVGRVADRRRRSDLCRKLH
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVANLPRLRGLHRLDCHLSHAGDPAPAGAGCHRRVDFSKESGAMIEFTLWDILRNLLLAT
HHHCCHHHCCCHHHHHECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
RWTILLSLVSFIGGGAVGLGLLLLRISKNKACRAFAKYYIELFQGTPLLMQLFIAFFGLG
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LFGIDVPAWLAAGMALILWTAAFLAEIWRGCVESVASGQWEASASLGMGRLQQMRYVILP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QALRVAIPPTVGFSVQIIKGTALTSIIGFVELSKAGTVVTNATFQPFTVYGLVALIYFAL
HHHHEECCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
CWPLSKSSQILERKLNVAHRNH
HCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]