| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is smoK [H]
Identifier: 190894668
GI number: 190894668
Start: 356602
End: 357681
Strand: Reverse
Name: smoK [H]
Synonym: RHECIAT_PC0000331
Alternate gene names: 190894668
Gene position: 357681-356602 (Counterclockwise)
Preceding gene: 190894669
Following gene: 190894667
Centisome position: 32.77
GC content: 62.04
Gene sequence:
>1080_bases ATGCTGGAACTGCGAAACGCCGCCAAGATGGTGGGCGCGGACTATCACATCTATCCGACCGATCTGGTCCTCGAGCGCGG CACGCTGAACGTCCTGCTCGGGCCGACGCTGTCGGGCAAGACGTCGCTGATGCGGCTGATGGCCGGGCTCGACCGTCCGA CCGCCGGCTCCGTGCATTTCGACGGCGCCGACGTCACCGGCATGCCGGTGCAGAAGCGCAATGTCGCCATGGTCTACCAG CAGTTCATCAATTATCCGGCACTGACCGTCTATGAGAACATCGCCTCGCCGATGCGCATCTCTGGCAAGGATGCCGCCAC CATCGACCGTGAGGTGCGCAAGGCGGCCGAGCTTCTAAAGCTTACGCCCTATCTCGACCGTACGCCGCTCCATCTCTCCG GCGGCCAGCAGCAGCGCACCGCGCTTGCGCGCGCGCTCGTCAAGAATGCCAGCCTGGTGCTGATGGACGAGCCGCTTGCC AATCTCGATTACAAGCTGCGCGAAGAGTTGCGGCAGGAATTGCCGAAGATATTCGCCCAGTCCGGCGCGATCTTCGTCTA CGCTACGACGGAACCCTCGGAAGCCTTGTTGCTTGGTGGCAATACGGCAGCGCTCAACGAGGGCCGGATCACACAGTTCG GCCCGACGATCGAGGTCTACCGCAATCCGCTCGATCTAACGACGGCGAAAACTTTCGCCGATCCGCCGCTGAATTTTATT GATCTGGTCAAATCGGACGGCAATTTCCTGCGCGATGGCGACGTGATTTTTGCCGTGCCGGCGCATCTTCAGAACGTGCC GGACGGGCCGGCAACGATCGCGTTTCACCCGCATCATCTTGCACCGACCGCCCAGACAGCCAATTCGGCGCGGCTGACGG CACGGACACAAATTTCGGAAATCACGGGGTCGGAAAGTTTCGTGCATCTGCAATTTGCCGATACCCGCTGGGTGATGCTT GCGCACGGCATCCATAACATCGACCCGGACGCGGACCTCTCCGTTTTCATCGACACGCGCCACCTGATGGCGTTCGGCGC GGACGGCCGGGCGATCACCACCGTCGGGCAGAGGGGCTAG
Upstream 100 bases:
>100_bases AGGAGCAGGCTCAGTCACTGGAGGAGTACATGGCTGCCATGCCGGCGATGGCCGGATAGGCGGCGTGTGATCCCCGCTGC GTGGAGGCACGGGAACGGGA
Downstream 100 bases:
>100_bases GAGAAGATCATGGCACGTATCACCCTCGATCATATTCGACATGCCTATGGGCCGAACCCGAAGACCGAGAAGGACTACGC CCTCAAGGAAGTACACCACG
Product: putative sugar ABC transporter ATP-binding protein
Products: NA
Alternate protein names: Protein PolK [H]
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MLELRNAAKMVGADYHIYPTDLVLERGTLNVLLGPTLSGKTSLMRLMAGLDRPTAGSVHFDGADVTGMPVQKRNVAMVYQ QFINYPALTVYENIASPMRISGKDAATIDREVRKAAELLKLTPYLDRTPLHLSGGQQQRTALARALVKNASLVLMDEPLA NLDYKLREELRQELPKIFAQSGAIFVYATTEPSEALLLGGNTAALNEGRITQFGPTIEVYRNPLDLTTAKTFADPPLNFI DLVKSDGNFLRDGDVIFAVPAHLQNVPDGPATIAFHPHHLAPTAQTANSARLTARTQISEITGSESFVHLQFADTRWVML AHGIHNIDPDADLSVFIDTRHLMAFGADGRAITTVGQRG
Sequences:
>Translated_359_residues MLELRNAAKMVGADYHIYPTDLVLERGTLNVLLGPTLSGKTSLMRLMAGLDRPTAGSVHFDGADVTGMPVQKRNVAMVYQ QFINYPALTVYENIASPMRISGKDAATIDREVRKAAELLKLTPYLDRTPLHLSGGQQQRTALARALVKNASLVLMDEPLA NLDYKLREELRQELPKIFAQSGAIFVYATTEPSEALLLGGNTAALNEGRITQFGPTIEVYRNPLDLTTAKTFADPPLNFI DLVKSDGNFLRDGDVIFAVPAHLQNVPDGPATIAFHPHHLAPTAQTANSARLTARTQISEITGSESFVHLQFADTRWVML AHGIHNIDPDADLSVFIDTRHLMAFGADGRAITTVGQRG >Mature_359_residues MLELRNAAKMVGADYHIYPTDLVLERGTLNVLLGPTLSGKTSLMRLMAGLDRPTAGSVHFDGADVTGMPVQKRNVAMVYQ QFINYPALTVYENIASPMRISGKDAATIDREVRKAAELLKLTPYLDRTPLHLSGGQQQRTALARALVKNASLVLMDEPLA NLDYKLREELRQELPKIFAQSGAIFVYATTEPSEALLLGGNTAALNEGRITQFGPTIEVYRNPLDLTTAKTFADPPLNFI DLVKSDGNFLRDGDVIFAVPAHLQNVPDGPATIAFHPHHLAPTAQTANSARLTARTQISEITGSESFVHLQFADTRWVML AHGIHNIDPDADLSVFIDTRHLMAFGADGRAITTVGQRG
Specific function: Part Of The Binding-Protein-Dependent Transport System For Sn-Glycerol-3-Phosphate. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=221, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI27262624, Length=194, Percent_Identity=27.8350515463918, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI27262626, Length=194, Percent_Identity=27.8350515463918, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI21536376, Length=194, Percent_Identity=27.8350515463918, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI150417984, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI27436953, Length=198, Percent_Identity=25.7575757575758, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=232, Percent_Identity=28.8793103448276, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=232, Percent_Identity=28.8793103448276, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27477115, Length=195, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI105990541, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI116734710, Length=198, Percent_Identity=25.7575757575758, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=25.2525252525253, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI148612844, Length=215, Percent_Identity=28.3720930232558, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI9961252, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI255708477, Length=215, Percent_Identity=28.3720930232558, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9961250, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4505771, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI31657092, Length=215, Percent_Identity=26.046511627907, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI42741659, Length=156, Percent_Identity=32.0512820512821, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI87082267, Length=309, Percent_Identity=33.3333333333333, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1790467, Length=324, Percent_Identity=31.7901234567901, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI87081709, Length=295, Percent_Identity=32.2033898305085, Blast_Score=165, Evalue=4e-42, Organism=Escherichia coli, GI1787370, Length=209, Percent_Identity=39.2344497607655, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=34.5291479820628, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1788761, Length=366, Percent_Identity=29.7814207650273, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=32.4324324324324, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=33.0275229357798, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI1787089, Length=241, Percent_Identity=35.6846473029046, Blast_Score=118, Evalue=6e-28, Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=32.4561403508772, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=31.6017316017316, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786253, Length=207, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=33.5135135135135, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1786703, Length=199, Percent_Identity=31.1557788944724, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081834, Length=172, Percent_Identity=35.4651162790698, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1786398, Length=202, Percent_Identity=29.2079207920792, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=28.5087719298246, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=27.1929824561404, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1788225, Length=244, Percent_Identity=31.9672131147541, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=33.0049261083744, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789891, Length=183, Percent_Identity=33.879781420765, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787500, Length=241, Percent_Identity=28.6307053941909, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787164, Length=190, Percent_Identity=31.0526315789474, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787105, Length=203, Percent_Identity=29.5566502463054, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI87081782, Length=189, Percent_Identity=32.8042328042328, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=25.764192139738, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1788644, Length=201, Percent_Identity=27.8606965174129, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=27.6190476190476, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786981, Length=226, Percent_Identity=31.4159292035398, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790544, Length=228, Percent_Identity=26.7543859649123, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787547, Length=224, Percent_Identity=23.2142857142857, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI145693107, Length=221, Percent_Identity=26.6968325791855, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.5230125523013, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=29.2181069958848, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=25, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1788053, Length=177, Percent_Identity=26.5536723163842, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=28.169014084507, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=209, Percent_Identity=27.7511961722488, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788210, Length=186, Percent_Identity=30.1075268817204, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI87082268, Length=218, Percent_Identity=26.1467889908257, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=25.4385964912281, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=26.605504587156, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788540, Length=188, Percent_Identity=29.7872340425532, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=168, Percent_Identity=27.9761904761905, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=24.8888888888889, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193202349, Length=183, Percent_Identity=31.6939890710383, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983510, Length=190, Percent_Identity=25.7894736842105, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71983523, Length=190, Percent_Identity=25.7894736842105, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71983516, Length=190, Percent_Identity=25.7894736842105, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71992290, Length=215, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115533592, Length=174, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569145, Length=193, Percent_Identity=26.4248704663212, Blast_Score=68, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17541710, Length=261, Percent_Identity=26.8199233716475, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193208177, Length=168, Percent_Identity=29.7619047619048, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI221512771, Length=211, Percent_Identity=27.9620853080569, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=25.2336448598131, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=26.6355140186916, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=23.8095238095238, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=181, Percent_Identity=30.939226519337, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24659289, Length=169, Percent_Identity=30.1775147928994, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582014, Length=175, Percent_Identity=30.8571428571429, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24582012, Length=175, Percent_Identity=30.8571428571429, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI85726357, Length=179, Percent_Identity=28.4916201117318, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397593, Length=153, Percent_Identity=30.718954248366, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR008995 - InterPro: IPR005116 [H]
Pfam domain/function: PF00005 ABC_tran; PF03459 TOBE [H]
EC number: NA
Molecular weight: Translated: 39191; Mature: 39191
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLELRNAAKMVGADYHIYPTDLVLERGTLNVLLGPTLSGKTSLMRLMAGLDRPTAGSVHF CCCCCCHHHHHCCCEEEECHHEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE DGADVTGMPVQKRNVAMVYQQFINYPALTVYENIASPMRISGKDAATIDREVRKAAELLK CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH LTPYLDRTPLHLSGGQQQRTALARALVKNASLVLMDEPLANLDYKLREELRQELPKIFAQ HCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC SGAIFVYATTEPSEALLLGGNTAALNEGRITQFGPTIEVYRNPLDLTTAKTFADPPLNFI CCCEEEEEECCCCCEEEECCCEEEECCCCEEEECCCCEEECCCCCCCCHHHCCCCCCCHH DLVKSDGNFLRDGDVIFAVPAHLQNVPDGPATIAFHPHHLAPTAQTANSARLTARTQISE HHCCCCCCEEECCCEEEEECHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHH ITGSESFVHLQFADTRWVMLAHGIHNIDPDADLSVFIDTRHLMAFGADGRAITTVGQRG CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEECCCCC >Mature Secondary Structure MLELRNAAKMVGADYHIYPTDLVLERGTLNVLLGPTLSGKTSLMRLMAGLDRPTAGSVHF CCCCCCHHHHHCCCEEEECHHEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE DGADVTGMPVQKRNVAMVYQQFINYPALTVYENIASPMRISGKDAATIDREVRKAAELLK CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH LTPYLDRTPLHLSGGQQQRTALARALVKNASLVLMDEPLANLDYKLREELRQELPKIFAQ HCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC SGAIFVYATTEPSEALLLGGNTAALNEGRITQFGPTIEVYRNPLDLTTAKTFADPPLNFI CCCEEEEEECCCCCEEEECCCEEEECCCCEEEECCCCEEECCCCCCCCHHHCCCCCCCHH DLVKSDGNFLRDGDVIFAVPAHLQNVPDGPATIAFHPHHLAPTAQTANSARLTARTQISE HHCCCCCCEEECCCEEEEECHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHH ITGSESFVHLQFADTRWVMLAHGIHNIDPDADLSVFIDTRHLMAFGADGRAITTVGQRG CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9335280 [H]