| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is gsiB [H]
Identifier: 190894570
GI number: 190894570
Start: 231234
End: 232748
Strand: Reverse
Name: gsiB [H]
Synonym: RHECIAT_PC0000232
Alternate gene names: 190894570
Gene position: 232748-231234 (Counterclockwise)
Preceding gene: 190894571
Following gene: 190894562
Centisome position: 21.32
GC content: 59.34
Gene sequence:
>1515_bases ATGACAAACAGGTGGAAATCAATCGGGCTCGCAGCCTTGCTCGCCGGCCTGACGCTCAGCGCAAGCTATGCCGACGCCGC CGGTGTGCTCACCATCGGCCGCCGCGAGGATTCGACGACGTTCGATCCGATCAAAACAGCCCAGAACATCGACAACTGGG TATTCTCAAACGTCTACGACGTGCTGATCCGCGTCGACAAGACAGGCACGAAGCTGGAGCCCGGTCTTGCCGAAAGCTGG ACGGCCGCGGATGACGGCCTGACCTACACGTTCAAGATTCGCGACACTAAATTCTCGGACGGTTCGCCGCTGACGGCGGA AGACGCCGCTTACAGCCTGCTGCGGATTCGCGACGACCCTGCTTCGCTCTGGAGCGATTCCTACAAGGTGATCGATACGG CGCTGGCCACCGACGCGCATACGCTGACGATCAAGCTCAAGAACCCGTCCGCGCCGTTCCTGTCGACGCTGGCGCTGCCG AACGCCTCCGTCATCTCCAAGAAGGGCATGGAATCGCTGGGGGCGGATGCCTACGGTGAAAAGCCGATCGCATCCGGCGC CTTCGTGATCGAGGAATGGCGGCGCGGCGACCGGATCATCCTGAAGAAGAACCCGAATTTCTGGCAGGCCGACCGCGTCA AGCTCGACGGCGTCGAATGGATCTCGGTGCCCGACGACAATACCCGCATGCTGAACGTCCAGGCCGGCGAGCTGGATGCA GCGATCTTCGTGCCCTTCTCCCGGGTCGAGGAACTGAAGAAGGATCCTAACCTCAAAGTCGCTATCGACGCCTCGACGCG TGAGGATCATTTGCTGATCAACCATGCGCATGGCGCGCTCGGCAAGAAGGAAGTCCGCCAGGCGCTGGATCTTGCGATCG ACAAAAAGGCGATCGTCGATACCGTCACCTTCGGCCAGGGCACCGTCGCCAATTCCTACATTCCGAAGGGTGCGCTCTAT TATTACGCCGACAATCTGCAGCGGCCTTATGATCCCGCCAAGGCCAAGGAGATGCTGGCGGCCGCCGGCGCATCCGACCT GACGCTCAACTATCTGGTGCGCGCCGGCGACGAAGTCGACGAGCAGACGGCCGTCCTGGTTCAGCAGCAGCTGCAGAAAG CCGGCATTACCGCCAACCTACAGAAGGTCGATCCGAGCCAGGAATGGGACATGACGGTTGCCGGCGACTACGACATCTCG GTCAACTATTGGACGAATGACATTCTCGATCCGGACCAGAAGACCACCTTCGTTCTCGGCCACGATTCCAACAACAACTA CCTGACGAACTACAAGAACGAGGCGGTGAAGGAGCTGGTCGCCAAGGCTCGCCTCGAGCTCGACCCGAAGAAGCGCGAAG CGATGTATGTTGATCTGCAGAAGATGGCTAAGGACGACGTCAACTGGATCGATCTTTACTACAGCCCCTATATCAACGTT TCGCGCAAGAATATCGAGAACTTCTACCAGAACCCGCTCGGCCGCTTCTTCCTGGAGGATACGGTCAAGAATTGA
Upstream 100 bases:
>100_bases GACAAGCCGCTGCTGCAGGGCGCCGGCGGCAAGGAGGATCTGCAATCGATACCGATCCAGCCCATCAAACGCATGCCATA ACAACGAAGGGAACGAACTC
Downstream 100 bases:
>100_bases GTTCCGGCAGCATCAATGCTCCGTCGCCGTAAAGGCGGCGGAGCTTCATTTGTTGCTGCGGCAAGTGGCTGGGGCAGCTT GGTTACTCGGCGGCCGCGAG
Product: putative dipeptide ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MTNRWKSIGLAALLAGLTLSASYADAAGVLTIGRREDSTTFDPIKTAQNIDNWVFSNVYDVLIRVDKTGTKLEPGLAESW TAADDGLTYTFKIRDTKFSDGSPLTAEDAAYSLLRIRDDPASLWSDSYKVIDTALATDAHTLTIKLKNPSAPFLSTLALP NASVISKKGMESLGADAYGEKPIASGAFVIEEWRRGDRIILKKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGELDA AIFVPFSRVEELKKDPNLKVAIDASTREDHLLINHAHGALGKKEVRQALDLAIDKKAIVDTVTFGQGTVANSYIPKGALY YYADNLQRPYDPAKAKEMLAAAGASDLTLNYLVRAGDEVDEQTAVLVQQQLQKAGITANLQKVDPSQEWDMTVAGDYDIS VNYWTNDILDPDQKTTFVLGHDSNNNYLTNYKNEAVKELVAKARLELDPKKREAMYVDLQKMAKDDVNWIDLYYSPYINV SRKNIENFYQNPLGRFFLEDTVKN
Sequences:
>Translated_504_residues MTNRWKSIGLAALLAGLTLSASYADAAGVLTIGRREDSTTFDPIKTAQNIDNWVFSNVYDVLIRVDKTGTKLEPGLAESW TAADDGLTYTFKIRDTKFSDGSPLTAEDAAYSLLRIRDDPASLWSDSYKVIDTALATDAHTLTIKLKNPSAPFLSTLALP NASVISKKGMESLGADAYGEKPIASGAFVIEEWRRGDRIILKKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGELDA AIFVPFSRVEELKKDPNLKVAIDASTREDHLLINHAHGALGKKEVRQALDLAIDKKAIVDTVTFGQGTVANSYIPKGALY YYADNLQRPYDPAKAKEMLAAAGASDLTLNYLVRAGDEVDEQTAVLVQQQLQKAGITANLQKVDPSQEWDMTVAGDYDIS VNYWTNDILDPDQKTTFVLGHDSNNNYLTNYKNEAVKELVAKARLELDPKKREAMYVDLQKMAKDDVNWIDLYYSPYINV SRKNIENFYQNPLGRFFLEDTVKN >Mature_503_residues TNRWKSIGLAALLAGLTLSASYADAAGVLTIGRREDSTTFDPIKTAQNIDNWVFSNVYDVLIRVDKTGTKLEPGLAESWT AADDGLTYTFKIRDTKFSDGSPLTAEDAAYSLLRIRDDPASLWSDSYKVIDTALATDAHTLTIKLKNPSAPFLSTLALPN ASVISKKGMESLGADAYGEKPIASGAFVIEEWRRGDRIILKKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGELDAA IFVPFSRVEELKKDPNLKVAIDASTREDHLLINHAHGALGKKEVRQALDLAIDKKAIVDTVTFGQGTVANSYIPKGALYY YADNLQRPYDPAKAKEMLAAAGASDLTLNYLVRAGDEVDEQTAVLVQQQLQKAGITANLQKVDPSQEWDMTVAGDYDISV NYWTNDILDPDQKTTFVLGHDSNNNYLTNYKNEAVKELVAKARLELDPKKREAMYVDLQKMAKDDVNWIDLYYSPYINVS RKNIENFYQNPLGRFFLEDTVKN
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787762, Length=507, Percent_Identity=29.3885601577909, Blast_Score=192, Evalue=5e-50, Organism=Escherichia coli, GI1787052, Length=503, Percent_Identity=29.4234592445328, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=25.4736842105263, Blast_Score=141, Evalue=1e-34, Organism=Escherichia coli, GI1787551, Length=488, Percent_Identity=25.4098360655738, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787495, Length=514, Percent_Identity=26.4591439688716, Blast_Score=129, Evalue=6e-31, Organism=Escherichia coli, GI1789397, Length=501, Percent_Identity=26.7465069860279, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1789887, Length=510, Percent_Identity=23.5294117647059, Blast_Score=115, Evalue=8e-27, Organism=Escherichia coli, GI87081878, Length=504, Percent_Identity=24.6031746031746, Blast_Score=106, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56083; Mature: 55951
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRWKSIGLAALLAGLTLSASYADAAGVLTIGRREDSTTFDPIKTAQNIDNWVFSNVYD CCCCHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEE VLIRVDKTGTKLEPGLAESWTAADDGLTYTFKIRDTKFSDGSPLTAEDAAYSLLRIRDDP EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHEEEEEEECCH ASLWSDSYKVIDTALATDAHTLTIKLKNPSAPFLSTLALPNASVISKKGMESLGADAYGE HHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCHHHHHHCHHHHCCCCCCC KPIASGAFVIEEWRRGDRIILKKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGELDA CCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCE AIFVPFSRVEELKKDPNLKVAIDASTREDHLLINHAHGALGKKEVRQALDLAIDKKAIVD EEECCHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHEE TVTFGQGTVANSYIPKGALYYYADNLQRPYDPAKAKEMLAAAGASDLTLNYLVRAGDEVD EEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCCC EQTAVLVQQQLQKAGITANLQKVDPSQEWDMTVAGDYDISVNYWTNDILDPDQKTTFVLG HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCEEEEEEECCCCCCCCCCCEEEEEE HDSNNNYLTNYKNEAVKELVAKARLELDPKKREAMYVDLQKMAKDDVNWIDLYYSPYINV ECCCCCEEECCHHHHHHHHHHHHHCCCCCCHHHHHEEEHHHHCCCCCCEEEEEECCCEEC SRKNIENFYQNPLGRFFLEDTVKN CHHHHHHHHHCHHHHHHHHHHCCC >Mature Secondary Structure TNRWKSIGLAALLAGLTLSASYADAAGVLTIGRREDSTTFDPIKTAQNIDNWVFSNVYD CCCHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEE VLIRVDKTGTKLEPGLAESWTAADDGLTYTFKIRDTKFSDGSPLTAEDAAYSLLRIRDDP EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHEEEEEEECCH ASLWSDSYKVIDTALATDAHTLTIKLKNPSAPFLSTLALPNASVISKKGMESLGADAYGE HHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCHHHHHHCHHHHCCCCCCC KPIASGAFVIEEWRRGDRIILKKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGELDA CCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCE AIFVPFSRVEELKKDPNLKVAIDASTREDHLLINHAHGALGKKEVRQALDLAIDKKAIVD EEECCHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHEE TVTFGQGTVANSYIPKGALYYYADNLQRPYDPAKAKEMLAAAGASDLTLNYLVRAGDEVD EEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCCC EQTAVLVQQQLQKAGITANLQKVDPSQEWDMTVAGDYDISVNYWTNDILDPDQKTTFVLG HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCEEEEEEECCCCCCCCCCCEEEEEE HDSNNNYLTNYKNEAVKELVAKARLELDPKKREAMYVDLQKMAKDDVNWIDLYYSPYINV ECCCCCEEECCHHHHHHHHHHHHHCCCCCCHHHHHEEEHHHHCCCCCCEEEEEECCCEEC SRKNIENFYQNPLGRFFLEDTVKN CHHHHHHHHHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA