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The map label for this gene is sigD [H]

Identifier: 190894382

GI number: 190894382

Start: 44864

End: 45412

Strand: Reverse

Name: sigD [H]

Synonym: RHECIAT_PC0000043

Alternate gene names: 190894382

Gene position: 45412-44864 (Counterclockwise)

Preceding gene: 190894386

Following gene: 190894381

Centisome position: 4.16

GC content: 62.48

Gene sequence:

>549_bases
ATGACCACCGCCCATTCGGAAGAAGCCCTGAAAGCACTGATGCTTCTCTCCCTTGACGGGGACGAGGCGGCCTATCGGCG
TTTGCTCACCGCTTTGCGCATGCTGCTCGTCGGTTATTACAGCCGCAGGATGGCTGCGGCGACGAAAGCGGATATGGAAG
ACCTGGTCCAGGAGACATTGCTGGCGCTGCATTCCCGCCGATCCACCTACGACCGGCAAAGACCTTTCACCGCCTGGTTC
TTCTCGATCGCCCGCTACAAGCTGATCGACCATCATCGCGGCCACGGTGGGCGCAGGCTGGCCGAGACCGAGCTTGGCGA
GGAGATCGAAAGCGACTTCAGCGAGGACATGCTGACGGCCCGCATGGATGTCGAGCGGTTGCTCGACGGACTGCCGCCGA
GACAGCAGGAACTGATCCGGCAGGTGAAGCTCGAAGGCCAGTCGGTCGCCGACACCGCAACCCGCACCGGCCAGTCTGAA
TCGGCGGTGAAAGTCGGTATCCATCGGGCGCTCAAGGCGCTCGGGGAGAGATTGCGAGGCGTATCGTGA

Upstream 100 bases:

>100_bases
GTTACAGCTTCACGTGCATGTGATAGAGCTGTGATGCGCAAAAATATTTGGTTTTCGCTGTAACCGATTGGCTGCTTTTA
CGAATGAACTCCCTGACAGC

Downstream 100 bases:

>100_bases
CAAAGACGGACGACATCATCGAACGCCTGGCAAGCGGCCTGAAGCCGGTGCCGCGCCATGCACTGCGGCGCCGCTTCGCG
CTCGGCATAATCCCCGCCCT

Product: putative ECF family RNA polymerase sigma factor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRMLLVGYYSRRMAAATKADMEDLVQETLLALHSRRSTYDRQRPFTAWF
FSIARYKLIDHHRGHGGRRLAETELGEEIESDFSEDMLTARMDVERLLDGLPPRQQELIRQVKLEGQSVADTATRTGQSE
SAVKVGIHRALKALGERLRGVS

Sequences:

>Translated_182_residues
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRMLLVGYYSRRMAAATKADMEDLVQETLLALHSRRSTYDRQRPFTAWF
FSIARYKLIDHHRGHGGRRLAETELGEEIESDFSEDMLTARMDVERLLDGLPPRQQELIRQVKLEGQSVADTATRTGQSE
SAVKVGIHRALKALGERLRGVS
>Mature_181_residues
TTAHSEEALKALMLLSLDGDEAAYRRLLTALRMLLVGYYSRRMAAATKADMEDLVQETLLALHSRRSTYDRQRPFTAWFF
SIARYKLIDHHRGHGGRRLAETELGEEIESDFSEDMLTARMDVERLLDGLPPRQQELIRQVKLEGQSVADTATRTGQSES
AVKVGIHRALKALGERLRGVS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20585; Mature: 20454

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRMLLVGYYSRRMAAATKADMEDLVQETL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALHSRRSTYDRQRPFTAWFFSIARYKLIDHHRGHGGRRLAETELGEEIESDFSEDMLTA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RMDVERLLDGLPPRQQELIRQVKLEGQSVADTATRTGQSESAVKVGIHRALKALGERLRG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
VS
CC
>Mature Secondary Structure 
TTAHSEEALKALMLLSLDGDEAAYRRLLTALRMLLVGYYSRRMAAATKADMEDLVQETL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALHSRRSTYDRQRPFTAWFFSIARYKLIDHHRGHGGRRLAETELGEEIESDFSEDMLTA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RMDVERLLDGLPPRQQELIRQVKLEGQSVADTATRTGQSESAVKVGIHRALKALGERLRG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
VS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]