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The map label for this gene is 18978252

Identifier: 18978252

GI number: 18978252

Start: 1732949

End: 1733548

Strand: Direct

Name: 18978252

Synonym: PF1880

Alternate gene names: NA

Gene position: 1732949-1733548 (Clockwise)

Preceding gene: 18978251

Following gene: 33359579

Centisome position: 90.81

GC content: 39.0

Gene sequence:

>600_bases
ATGATTCGCTTCATCCTAGATACCAGCATTTTCGTTAATCCAGACGTAAGGAAGAAGTTTGGGAATACCCCAACTGAGGC
CATGAAAACCTTCCTCAAATACGCTGAGAAGCTCTTTGGAAAAGTTGAATTTTACATGCCCCCTGGGATCTACAAGGAAG
TCAAAAACTTCTTGGAAGATATTCCCCCCGAGATGGAACTTTACATAATAAAAAAACCTCCAAATGTTCACGATATAAAA
ATCCCCGCATTCGTAGTCTATGAGCTAATAGAGGATATAAGAAGGAGAGTTGACAAGGGACTTAGAGTAGCAGAGAAGGC
TGTTAGAGAGAGCGTAATAGACACCAACAACGTTGACAAAATAATACAAAAGCTGAGAAGAAATTACAGAAAAGCTCTAA
GAGAGGGAATTGTTGACAGCACTGAAGATTTTGAGCTTATACTGCTAGCAAAGGAGATCGACGGGATTATTGTATCAGCT
GACGTTGGAATTCTCACTTGGGCAGAGAAGATGGGAATTAAATGGGTTGATGCATTTAAATTTAAAGAACTATTAGATGA
GCTAGTAGAAAAGGTTGAAAGTGAAAAGGAAAGGAAATGA

Upstream 100 bases:

>100_bases
GGCACAGGCCCACCTGGGTTAGCCCGCCTGAGAATGCATACATGCTACGATGAGGGCGGGTGTTACGGGTGGGCCACATA
TAAAATTCCAGGTGAGGGGT

Downstream 100 bases:

>100_bases
AATCAGACCTTTCTCTCTAGAACGATCTCAATAGTTGAAGTGTTTGTTGTTCTACCGTCTGCAGTTGGAAGCTCCTCAGT
ACCGATCTTAATCTCCTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIRFILDTSIFVNPDVRKKFGNTPTEAMKTFLKYAEKLFGKVEFYMPPGIYKEVKNFLEDIPPEMELYIIKKPPNVHDIK
IPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTNNVDKIIQKLRRNYRKALREGIVDSTEDFELILLAKEIDGIIVSA
DVGILTWAEKMGIKWVDAFKFKELLDELVEKVESEKERK

Sequences:

>Translated_199_residues
MIRFILDTSIFVNPDVRKKFGNTPTEAMKTFLKYAEKLFGKVEFYMPPGIYKEVKNFLEDIPPEMELYIIKKPPNVHDIK
IPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTNNVDKIIQKLRRNYRKALREGIVDSTEDFELILLAKEIDGIIVSA
DVGILTWAEKMGIKWVDAFKFKELLDELVEKVESEKERK
>Mature_199_residues
MIRFILDTSIFVNPDVRKKFGNTPTEAMKTFLKYAEKLFGKVEFYMPPGIYKEVKNFLEDIPPEMELYIIKKPPNVHDIK
IPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTNNVDKIIQKLRRNYRKALREGIVDSTEDFELILLAKEIDGIIVSA
DVGILTWAEKMGIKWVDAFKFKELLDELVEKVESEKERK

Specific function: Unknown

COG id: COG1458

COG function: function code R; Predicted DNA-binding protein containing PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0278 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1880_PYRFU (Q8TH04)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579609.1
- ProteinModelPortal:   Q8TH04
- EnsemblBacteria:   EBPYRT00000005012
- GeneID:   1469759
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1880
- NMPDR:   fig|186497.1.peg.1929
- GeneTree:   EBGT00050000022556
- HOGENOM:   HBG507856
- OMA:   KTPNRYE
- ProtClustDB:   PRK04358
- HAMAP:   MF_01078
- InterPro:   IPR014856
- InterPro:   IPR022785
- TIGRFAMs:   TIGR03875

Pfam domain/function: PF08745 UPF0278

EC number: NA

Molecular weight: Translated: 23267; Mature: 23267

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFILDTSIFVNPDVRKKFGNTPTEAMKTFLKYAEKLFGKVEFYMPPGIYKEVKNFLED
CEEEEEECCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHH
IPPEMELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTNNVDK
CCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IIQKLRRNYRKALREGIVDSTEDFELILLAKEIDGIIVSADVGILTWAEKMGIKWVDAFK
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHCCEEEECCCHHHHHHHHHCCHHHHHHH
FKELLDELVEKVESEKERK
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRFILDTSIFVNPDVRKKFGNTPTEAMKTFLKYAEKLFGKVEFYMPPGIYKEVKNFLED
CEEEEEECCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHH
IPPEMELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTNNVDK
CCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IIQKLRRNYRKALREGIVDSTEDFELILLAKEIDGIIVSADVGILTWAEKMGIKWVDAFK
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHCCEEEECCCHHHHHHHHHCCHHHHHHH
FKELLDELVEKVESEKERK
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA