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The map label for this gene is yohK [H]

Identifier: 18978217

GI number: 18978217

Start: 1702086

End: 1702760

Strand: Direct

Name: yohK [H]

Synonym: PF1845

Alternate gene names: 18978217

Gene position: 1702086-1702760 (Clockwise)

Preceding gene: 33359576

Following gene: 18978218

Centisome position: 89.2

GC content: 40.3

Gene sequence:

>675_bases
ATGAACACATTTGGAATATTTCTCACAATCTCAGCATATACATTTTTCTCCTGGGCATATTCCAAGAAGAAAACTCCAAT
ATTAAACCCAGTTCTCCTCTCAATACTTCTAATCGCTCTCATTCTTAAAGTTGGGAATATTAGCTACGAGAAATATATGG
AATCAGCGAGATTTCTGAGCTTTTTACTAGGACCAGCTGTTGTAAGTTTAGCTATCCCCCTATATAAGCAAATCAATATT
GTGAAAGAATATAAGAAGGAGATTGCAACTGGGATCATCACGGGTGGAACTACGGCAATTCTTTCAGCTGTATATATCTT
GAAAGCTTTTAATAGCCCAGAAATTCTCCAGAGAACTATTGCCCCAAAAAGCGTGACAACGGCAATTGCAATGGGGGTTA
GTGAAAAGATTGGTGGAATTCCAGAACTAACAGCAGTTCTAGTAATCTTAACGGGAATTCTTGGAAATGCCCTTGCTCCA
GAGTTACTTGACTTCTTCAAGATCAAAGATAGGGTGGCGAGAGGACTAGCTACGGGAGTTTCTTCTCATGGCCTCGGCAC
CGCAAGAATAATACTTGAAGATGAGTTATCCGGAGCAGTAAGTGGACTAGCTATGGCTCTCAACGGTGTTTACACGGCCT
TCCTGCTTCCTTTAATAATAGAACTAATAGTGTGA

Upstream 100 bases:

>100_bases
ATCTCCTAAAGGAAAACATTGTGGCAATAGTAACTGCCCTCATTTTCAGCTTTCTGATAACTCTGTGGGCAACAGGAAAG
GTTGTGGAGGTGCTTAGAAG

Downstream 100 bases:

>100_bases
TTGGAGATGATGAAAGAATACGTAGCACCACTAATCCTACTTCCTCTTTCCTTTATCCCAATTTTGGCTAGAACCTTCTA
CTTCTGGGTAGTCTTAGTCG

Product: murein hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNTFGIFLTISAYTFFSWAYSKKKTPILNPVLLSILLIALILKVGNISYEKYMESARFLSFLLGPAVVSLAIPLYKQINI
VKEYKKEIATGIITGGTTAILSAVYILKAFNSPEILQRTIAPKSVTTAIAMGVSEKIGGIPELTAVLVILTGILGNALAP
ELLDFFKIKDRVARGLATGVSSHGLGTARIILEDELSGAVSGLAMALNGVYTAFLLPLIIELIV

Sequences:

>Translated_224_residues
MNTFGIFLTISAYTFFSWAYSKKKTPILNPVLLSILLIALILKVGNISYEKYMESARFLSFLLGPAVVSLAIPLYKQINI
VKEYKKEIATGIITGGTTAILSAVYILKAFNSPEILQRTIAPKSVTTAIAMGVSEKIGGIPELTAVLVILTGILGNALAP
ELLDFFKIKDRVARGLATGVSSHGLGTARIILEDELSGAVSGLAMALNGVYTAFLLPLIIELIV
>Mature_224_residues
MNTFGIFLTISAYTFFSWAYSKKKTPILNPVLLSILLIALILKVGNISYEKYMESARFLSFLLGPAVVSLAIPLYKQINI
VKEYKKEIATGIITGGTTAILSAVYILKAFNSPEILQRTIAPKSVTTAIAMGVSEKIGGIPELTAVLVILTGILGNALAP
ELLDFFKIKDRVARGLATGVSSHGLGTARIILEDELSGAVSGLAMALNGVYTAFLLPLIIELIV

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=205, Percent_Identity=41.9512195121951, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 23976; Mature: 23976

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFGIFLTISAYTFFSWAYSKKKTPILNPVLLSILLIALILKVGNISYEKYMESARFLS
CCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FLLGPAVVSLAIPLYKQINIVKEYKKEIATGIITGGTTAILSAVYILKAFNSPEILQRTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHC
APKSVTTAIAMGVSEKIGGIPELTAVLVILTGILGNALAPELLDFFKIKDRVARGLATGV
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSHGLGTARIILEDELSGAVSGLAMALNGVYTAFLLPLIIELIV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNTFGIFLTISAYTFFSWAYSKKKTPILNPVLLSILLIALILKVGNISYEKYMESARFLS
CCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FLLGPAVVSLAIPLYKQINIVKEYKKEIATGIITGGTTAILSAVYILKAFNSPEILQRTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHC
APKSVTTAIAMGVSEKIGGIPELTAVLVILTGILGNALAPELLDFFKIKDRVARGLATGV
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSHGLGTARIILEDELSGAVSGLAMALNGVYTAFLLPLIIELIV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]