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The map label for this gene is rpl4lp [H]

Identifier: 18978196

GI number: 18978196

Start: 1683145

End: 1683912

Strand: Reverse

Name: rpl4lp [H]

Synonym: PF1824

Alternate gene names: 18978196

Gene position: 1683912-1683145 (Counterclockwise)

Preceding gene: 18978197

Following gene: 18978195

Centisome position: 88.24

GC content: 43.23

Gene sequence:

>768_bases
ATGAAGGTAAAGGTTTTTGACCTTAACGGTCAACCTGTTGGCGAAATAGAGCTTCCGAAGGTATTCTTCACTCCTTTTAG
GCCAGACCTTATTAGAAGAGCTGTTATTGCATCCTGGACTCACAGAATTCAACCTCAAGGAAGAGATCCAATGGCTGGTA
AAAGGAGAGTTACCGAAAACATTGGAAAGGGACACAGCATGGCAAGAGTTGAAAGGCTAAAGACACCTCCAAGGTATGCA
GCATTTGTCCCATTTGCCAGAGGTGGAAGAAGAACGCACCCACCAAAGGTTGAGAAGATAATATGGGAAGATATTAACAA
GAAGGAGAAGAGACTGGCATTAATGAGTGCAATAGCAGCTACCGCTAACTATGATTTAGTAAGAGCTAGAGGCCACATAA
TTGATAACGTTCCTCAACTTCCGTTGATAGTTGTGGATGATCTTCAAAAGGTTCAGAAGACAAGGGAAACTAGAGAAATA
TTCAAGAAGCTTGGAATATGGGATGATATCGTTAGAGCAAAAGAGAAGTCTGGAGTAAGAGCTGGAAAGGGTAAAATGAG
AGGAAGAAGGTACAAGAAGGCCAAGGGTCCATTGATCGTAGTTGGAAAGAATGAGGGAATTGTCCTTGGAGCAAGAAACC
ACCCAGGTGTTGATGTAGTGGTTGTGGACAACCTCGGAGTTGAACATTTGGCTCCTGGAACTCACCCAGGTAGATTAACT
GTTTGGACAGTTAGTGCTATAGAGAGACTTAGGGAGTTGTATGGGTGA

Upstream 100 bases:

>100_bases
AAGACCTGCTATAAGACCTCCAAAGAAGAAGCCACCTGTCCAAAGGCCTCAGATAACTTATGTAAGTGTAGAATCAAAGC
AGTGAGATGGGGTGAGATAA

Downstream 100 bases:

>100_bases
TGAAAATGGATCCTTACAAGGTTATAATTAGGCCCGTTGTTACGGAAAAAGCGATATCGTTAATTGAAAAAGAGAACAAG
CTTACATTTATAGTTGACAG

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA
AFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREI
FKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
VWTVSAIERLRELYG

Sequences:

>Translated_255_residues
MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA
AFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREI
FKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
VWTVSAIERLRELYG
>Mature_255_residues
MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA
AFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREI
FKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
VWTVSAIERLRELYG

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=258, Percent_Identity=37.2093023255814, Blast_Score=151, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17508669, Length=258, Percent_Identity=37.2093023255814, Blast_Score=164, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6320215, Length=259, Percent_Identity=36.6795366795367, Blast_Score=150, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6319505, Length=259, Percent_Identity=36.6795366795367, Blast_Score=150, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24650747, Length=259, Percent_Identity=37.4517374517375, Blast_Score=162, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 28709; Mature: 28709

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN
CEEEEEECCCCCCCCEECCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
IGKGHSMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAA
HCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
TANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVR
HCCCHHEECCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
AGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
CCCCCCCCHHHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCCCCCCEEE
VWTVSAIERLRELYG
EEEHHHHHHHHHHCC
>Mature Secondary Structure
MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN
CEEEEEECCCCCCCCEECCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
IGKGHSMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAA
HCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
TANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVR
HCCCHHEECCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
AGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
CCCCCCCCHHHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCCCCCCEEE
VWTVSAIERLRELYG
EEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]