Click here to switch to the map view.

The map label for this gene is rpmC

Identifier: 18978190

GI number: 18978190

Start: 1680419

End: 1680637

Strand: Reverse

Name: rpmC

Synonym: PF1818

Alternate gene names: 18978190

Gene position: 1680637-1680419 (Counterclockwise)

Preceding gene: 18978191

Following gene: 18978189

Centisome position: 88.07

GC content: 42.01

Gene sequence:

>219_bases
ATGAAGCCGAGTGAAATCAGAGAAATGAGTATTGAGGAGATTGACGCTAAAATTAGGGAGTTAAGGCTTCAGCTTGCAAA
GGAGAGGGGACTCCTAACAATGGGAACATCTCTCGAAAATCCTATGGTTATTAGGAATTTGAGGAGAGATATCGCCCGCC
TCCTGACAATTAAGAAGGAGAAGCTTAGGGAAAGAGAAAAAGGTAAGGTGAAAAAGTGA

Upstream 100 bases:

>100_bases
GGAGTCATTGGAGTTAAAGTCGCAATTATGCCTCCAGGAGCAAGACTTCCCGATGAAATTGAGATCATAGAAAAACCAGT
TGAGGAAGAGGTGGTGAGCA

Downstream 100 bases:

>100_bases
AGGTGGTGTTTGGTGCCCAGGATTGTAAACCCCTTGGATGAAATGCTATTTAAGGAGGTACTAAAGGAGCAGCAGAGGAT
TAGAGTCTACACAGAAAGGG

Product: 50S ribosomal protein L29P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVKK

Sequences:

>Translated_72_residues
MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVKK
>Mature_72_residues
MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVKK

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_PYRFU (Q8U005)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579547.1
- ProteinModelPortal:   Q8U005
- SMR:   Q8U005
- EnsemblBacteria:   EBPYRT00000005413
- GeneID:   1469697
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1818
- NMPDR:   fig|186497.1.peg.1867
- GeneTree:   EBGT00050000023220
- HOGENOM:   HBG730819
- OMA:   ENPMVIR
- ProtClustDB:   PRK14549
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_A
- InterPro:   IPR001854
- InterPro:   IPR018254
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 8529; Mature: 8529

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
KLREREKGKVKK
HHHHHHCCCCCC
>Mature Secondary Structure
MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
KLREREKGKVKK
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA