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The map label for this gene is ftsY [C]

Identifier: 18978138

GI number: 18978138

Start: 1642867

End: 1643835

Strand: Reverse

Name: ftsY [C]

Synonym: PF1766

Alternate gene names: 18978138

Gene position: 1643835-1642867 (Counterclockwise)

Preceding gene: 18978147

Following gene: 18978137

Centisome position: 86.14

GC content: 40.04

Gene sequence:

>969_bases
ATGTTTGGAAAGCTTAGAGAGAAGCTAAAGTCATTCGTGAAAAGAGTTGAAGAAGAAGTCGAAAAGGAAGAGGAGGAAGT
TGAGAAAAAGGGGTTATTGGATAGAATACTGACTGTTGAAATTAAGGAAAAGGACGTTGACAAAGCCTTGGATGAGCTTG
AAATTGATCTTCTTGAAGCTGACGTCGCTCTTGAGGTTGTCGATGCATTAAGAGAAAAGATAAAACAAAAGCTTGTAGGT
AAAAAAGTTAGAATTGGAACTGATAAAGGAAAAATAATAGAAGAGGCCGTTAAGGAGGCAGTTTCCGAAATCTTGGAGAC
TTCTAGGAGAATAGACCTAATTGAGGAAATTAGAAAAGCGGAAAAGCCCTACGTTATTATGTTTGTGGGATTCAACGGTT
CGGGAAAAACAACCACGATAGCAAAGCTGGCTAATTGGCTTAAAAATCACGGATTTAGTGTCGTTATAGCTGCAAGTGAC
ACTTTTAGGGCAGGGGCAATAGAGCAATTGGAGGAGCATGCTAAAAGAATTGGTGTAAAAGTAATAAAACACTCCTATGG
AGCTGATCCTGCGGCTGTTGCATATGATGCAATACAACATGCCAAAGCTAGGGGAATAGATGTCGTTCTTATCGATACAG
CGGGGAGAAGCGAGACAAACAGGAATTTAATGGATGAAATGAAGAAAATTGCAAGAGTTACAAAGCCAAATCTTGTCATA
TTTGTTGGGGATGCATTGGCTGGAAATGCCATCGTTGAACAGGCTCGCCAGTTTAACGAAGCAGTTAAGATCGATGGGAT
CATATTAACAAAGCTTGATGCAGATGCTAGGGGAGGAGCAGCTTTAAGCATCAGCTATGTAATAGATGCTCCAATCCTCT
TTGTAGGAGTAGGACAAGGATACGATGATCTAAGACCATTTGAAAAGGAATGGTTCTTAGAGAGAATATTTGGTGAGGAA
AATGCTTAG

Upstream 100 bases:

>100_bases
AAAAGGGACAATGATCATGAGTATTAATAATGGAAAGGTGTAGTATGGAAAAAGTAAAAGTTAAAGCGACTTTCATACTA
CCAAAGACGGGGGAAGTACA

Downstream 100 bases:

>100_bases
AGAAACTTCAGAAGGAGTAATTTTATCAGTCATAGTAGCTCCCAACGCTAGAGAAACAAAAATTGTTGGTATAGATGGAA
CTAGGGGTAGAGTGAAAGTA

Product: signal recognition particle receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG
KKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD
TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI
FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE
NA

Sequences:

>Translated_322_residues
MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG
KKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD
TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI
FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE
NA
>Mature_322_residues
MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG
KKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD
TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI
FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE
NA

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI295424842, Length=293, Percent_Identity=40.2730375426621, Blast_Score=223, Evalue=1e-58,
Organism=Homo sapiens, GI23308697, Length=293, Percent_Identity=40.2730375426621, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI4507215, Length=284, Percent_Identity=34.8591549295775, Blast_Score=176, Evalue=2e-44,
Organism=Homo sapiens, GI226371618, Length=238, Percent_Identity=34.0336134453782, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI89061728, Length=136, Percent_Identity=33.8235294117647, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1789874, Length=205, Percent_Identity=48.780487804878, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788963, Length=280, Percent_Identity=37.1428571428571, Blast_Score=184, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI193206261, Length=282, Percent_Identity=40.7801418439716, Blast_Score=201, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17539958, Length=278, Percent_Identity=31.294964028777, Blast_Score=167, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6320498, Length=309, Percent_Identity=33.9805825242718, Blast_Score=175, Evalue=7e-45,
Organism=Saccharomyces cerevisiae, GI6325345, Length=280, Percent_Identity=35.7142857142857, Blast_Score=172, Evalue=9e-44,
Organism=Drosophila melanogaster, GI24641198, Length=288, Percent_Identity=39.2361111111111, Blast_Score=205, Evalue=4e-53,
Organism=Drosophila melanogaster, GI17647949, Length=286, Percent_Identity=33.5664335664336, Blast_Score=172, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 35814; Mature: 35814

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHH
DVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK
CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI
HHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG
EECCCHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCC
YDDLRPFEKEWFLERIFGEENA
CHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHH
DVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK
CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI
HHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG
EECCCHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCC
YDDLRPFEKEWFLERIFGEENA
CHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]