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The map label for this gene is asnC [C]

Identifier: 18978106

GI number: 18978106

Start: 1610417

End: 1610863

Strand: Direct

Name: asnC [C]

Synonym: PF1734

Alternate gene names: 18978106

Gene position: 1610417-1610863 (Clockwise)

Preceding gene: 18978105

Following gene: 18978108

Centisome position: 84.39

GC content: 34.23

Gene sequence:

>447_bases
ATGGAAATCGACGATCTCGACAGGAAGATTTTATCTCTTTTAATAGAAGACTCGAGACTGTCGTATAGAGAAATAGCAAA
AAAACTCAATGTTGCAGTTGGTACAATATACAACAGAATCAAAAAACTTGAAGATATGGGAGTAATTCAAGGATTTACAG
TAAAGTTGAACTATGAGAAGTTAGGGTACGAGTTAACCGCAATTATTGGAATTAAAGCCCAGGGAAAGAAAATTAGAGAA
ATAGAGAGAATAATTGCAAGAGATAAGCATGTAACATGTGTGTATGATGTGACAGGAGAATATGACATAATTGTTATTGC
AAAGTTTAGATCAAGAGAAGATATGAACAGGTTCGTAAAGAGCGTGCTAAGCGTTGATGGAGTTGAAAAAACAAATACAC
ATGTTGCATTAGAAATAGTGAAAGAAGACTTCAGACTAGAACCTTAG

Upstream 100 bases:

>100_bases
CCCCGATGCCCTGGAATAAATTCTCCAGATGGAGAAGGTATTGTGGAGATAATCAAAAAGTATTTTATTCCAATTATTGA
AGAATTAAAGGGTGAAATTA

Downstream 100 bases:

>100_bases
AGGTTAACCAGTGCCTCTACTGGAATGTTGTATTCTTCTTTGAGCCTTTCTACAATATCACCAACACTTATTAAGAAGAA
CATTCCAACTGGAATTGCTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MEIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEKLGYELTAIIGIKAQGKKIRE
IERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVKSVLSVDGVEKTNTHVALEIVKEDFRLEP

Sequences:

>Translated_148_residues
MEIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEKLGYELTAIIGIKAQGKKIRE
IERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVKSVLSVDGVEKTNTHVALEIVKEDFRLEP
>Mature_148_residues
MEIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEKLGYELTAIIGIKAQGKKIRE
IERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVKSVLSVDGVEKTNTHVALEIVKEDFRLEP

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790182, Length=139, Percent_Identity=30.9352517985612, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=30.0699300699301, Blast_Score=70, Evalue=5e-14,
Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=26.9736842105263, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REG8_PYRFU (Q8U067)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579463.1
- ProteinModelPortal:   Q8U067
- SMR:   Q8U067
- EnsemblBacteria:   EBPYRT00000005771
- GeneID:   1469611
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1734
- NMPDR:   fig|186497.1.peg.1782
- GeneTree:   EBGT00050000022216
- HOGENOM:   HBG740878
- OMA:   DVTGEYD
- ProtClustDB:   CLSK377293
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 17075; Mature: 17075

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEK
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
LGYELTAIIGIKAQGKKIREIERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVK
HCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHH
SVLSVDGVEKTNTHVALEIVKEDFRLEP
HHHHCCCCCCCCCHHHEEEEHHHHCCCC
>Mature Secondary Structure
MEIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEK
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
LGYELTAIIGIKAQGKKIREIERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVK
HCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHH
SVLSVDGVEKTNTHVALEIVKEDFRLEP
HHHHCCCCCCCCCHHHEEEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA