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The map label for this gene is rpl18e [H]

Identifier: 18978018

GI number: 18978018

Start: 1534266

End: 1534628

Strand: Reverse

Name: rpl18e [H]

Synonym: PF1646

Alternate gene names: 18978018

Gene position: 1534628-1534266 (Counterclockwise)

Preceding gene: 18978019

Following gene: 18978017

Centisome position: 80.42

GC content: 41.87

Gene sequence:

>363_bases
ATGAAGAGAACAGGTCCAACTGATCCAAATCTTAGGAGGCTCATTAGATACCTTAGGAAAAAGTCAAATGAATATGGAGT
CAAGATATGGAAAGACGTAGCTTGGAGGTTAGAAAGACCTAGAAGGCAGAGGGCAGAAGTTAATGTAAGTAAGATCAACA
GATATGCCAACGACGGAGAAATGATCGTTGTTCCAGGAAGCGTTCTTGGAGCTGGAAAGCTAGAAAAGAAAGTTATCGTT
GCAGCTTGGAAGTTCAGCGAAACAGCTAGAAGAAAGATCATTGAGGCTGGTGGGGAGGCTATAACAATTGAAGAGCTCAT
TGAAAGAAATCCGACTGGAAGTGGAGTAAGAATAATGGAGTGA

Upstream 100 bases:

>100_bases
GTTCCGGGGTTCAAATCCCCGCCCCCGCACCAGTATTTACGCTCACCCCGCCCTTGTCGGTTTCCCTGCGGCGAGATAAA
AAGATAGGGGGAATGCATTT

Downstream 100 bases:

>100_bases
TGGGCCATGAGGATTATTAACGCTGAAGGTTTAATACTTGGAAGATTGGCATCAAAGGTTGCAAAGATGCTCCTTGAGGG
TGAAGAAGTTGTCATAGTTA

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGEMIVVPGSVLGAGKLEKKVIV
AAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME

Sequences:

>Translated_120_residues
MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGEMIVVPGSVLGAGKLEKKVIV
AAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME
>Mature_120_residues
MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGEMIVVPGSVLGAGKLEKKVIV
AAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000039
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 13732; Mature: 13732

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS01106 RIBOSOMAL_L18E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGE
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCC
MIVVPGSVLGAGKLEKKVIVAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME
EEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGE
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCC
MIVVPGSVLGAGKLEKKVIVAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME
EEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]