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The map label for this gene is rnp4

Identifier: 18977985

GI number: 18977985

Start: 1503510

End: 1503863

Strand: Reverse

Name: rnp4

Synonym: PF1613

Alternate gene names: 18977985

Gene position: 1503863-1503510 (Counterclockwise)

Preceding gene: 18977986

Following gene: 33359569

Centisome position: 78.81

GC content: 33.62

Gene sequence:

>354_bases
GTGGCTAAATACAATGAGAAAAAAGAAAAAAAGAGAATTGCAAAAGAGAGAATCGATATCTTGTTTAGCTTAGCTGAGAG
AGTTTTCCCTTATTCTCCTGAATTAGCGAAGAGATATGTTGAGTTAGCCCTACTAGTTCAACAAAAGGCTAAGGTTAAAA
TTCCCAGGAAGTGGAAAAGAAGGTACTGTAAAAAGTGCCATGCATTCCTCGTTCCAGGAATTAATGCTAGAGTTAGGCTT
AGACAAAAAAGAATGCCTCATATTGTCGTTAAATGCTTAGAATGTGGTCATATTATGAGATATCCCTATATAAAAGAAAT
AAAAAAGAGAAGAAAAGAAAAAATGGAATATTAG

Upstream 100 bases:

>100_bases
TTGGGTTTCACGAAAGCCAAAGCTGAGGAAAGTATAGAAAAGCTAGTTGCTAATGGCTATATATATGAGCCTGTTTCTGG
GTTTTACAAGGTGGTGAAGA

Downstream 100 bases:

>100_bases
TGGTCGAAATCCTTAAATAGGAGCTATAAATTATAGTAAATAGTGGTGAGAAAAATGGTGGTGAGATTGGGATACCAAGA
TGCTGTTGTTGTTATAGATG

Product: ribonuclease P protein component 4

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MAKYNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRL
RQKRMPHIVVKCLECGHIMRYPYIKEIKKRRKEKMEY

Sequences:

>Translated_117_residues
MAKYNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRL
RQKRMPHIVVKCLECGHIMRYPYIKEIKKRRKEKMEY
>Mature_116_residues
AKYNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLR
QKRMPHIVVKCLECGHIMRYPYIKEIKKRRKEKMEY

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_PYRFU (Q8U0H6)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579342.1
- PDB:   2K3R
- PDB:   2KI7
- PDBsum:   2K3R
- PDBsum:   2KI7
- ProteinModelPortal:   Q8U0H6
- SMR:   Q8U0H6
- EnsemblBacteria:   EBPYRT00000004329
- GeneID:   1469490
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1613
- NMPDR:   fig|186497.1.peg.1661
- GeneTree:   EBGT00050000022651
- HOGENOM:   HBG731499
- OMA:   HVVITCL
- ProtClustDB:   PRK03954
- BRENDA:   3.1.26.5
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PANTHER:   PTHR14742
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 14304; Mature: 14172

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYIKEIKKRRKEKMEY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKYNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYIKEIKKRRKEKMEY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA