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The map label for this gene is ygfS [H]

Identifier: 18977851

GI number: 18977851

Start: 1382919

End: 1383440

Strand: Direct

Name: ygfS [H]

Synonym: PF1479

Alternate gene names: 18977851

Gene position: 1382919-1383440 (Clockwise)

Preceding gene: 18977850

Following gene: 18977852

Centisome position: 72.47

GC content: 43.68

Gene sequence:

>522_bases
ATGAGCGAAGAAGTTCAAGAAAGGATATGGATTCTAATAACTCCAGACAAATGTAGTGGATGTAGGCTATGTGAAGTCAC
CTGTTCTCTGGAACATGAGGGAATTATATGGCCAGAGGCCTCAAGAATCCGAGTATTTGAGCTCTTCCCAGGGATTAACG
TTCCTCACACCTGTGTTCAATGCCCAGATTACCCTTGTGTAAATGCCTGTCCAACAAATGCCCTAAGCGTTGATGAAAAG
ACAGGAGCTGTTGTCGTTAATGAAGAAAAATGCATAACCTGTGGCGCATGTGTTCTTGCCTGTCCTGGGAAAGTCCCGAG
GATACCAGCAGGAAAAGGAAGTGTAGTGATATGTGACCTCTGTGGTGGAAATCCAAAGTGTGTTGAGATATGTCATGAAG
CAGGACATGATGCTCTGAAGATTGTTACAGGAAACTACAGGCCAATTTACAGAACTTTTGCCAAGGATCCACAGGAGAAA
AGCCTTGATATAGCAAGAAAGGTCTTTGGAGAAGATTTCTGA

Upstream 100 bases:

>100_bases
AATATGTTAAAAACAACACTTTTTATGTTTAGAATTATATTTGAAGGTTTCAATAATCTTTATATGAACTAACTCCCAAC
TATATTCCTGGTGATATAAT

Downstream 100 bases:

>100_bases
GGTGAGGAAAATGTATGCATACAATGGAAAACTTCTCGATGTGGACTTAACTAGAGAAAAAGTTAAGGAAGTTGAACTAA
GTGAAGATGTTCTAAAAAAG

Product: putative oxidoreductase, Fe-S subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSEEVQERIWILITPDKCSGCRLCEVTCSLEHEGIIWPEASRIRVFELFPGINVPHTCVQCPDYPCVNACPTNALSVDEK
TGAVVVNEEKCITCGACVLACPGKVPRIPAGKGSVVICDLCGGNPKCVEICHEAGHDALKIVTGNYRPIYRTFAKDPQEK
SLDIARKVFGEDF

Sequences:

>Translated_173_residues
MSEEVQERIWILITPDKCSGCRLCEVTCSLEHEGIIWPEASRIRVFELFPGINVPHTCVQCPDYPCVNACPTNALSVDEK
TGAVVVNEEKCITCGACVLACPGKVPRIPAGKGSVVICDLCGGNPKCVEICHEAGHDALKIVTGNYRPIYRTFAKDPQEK
SLDIARKVFGEDF
>Mature_172_residues
SEEVQERIWILITPDKCSGCRLCEVTCSLEHEGIIWPEASRIRVFELFPGINVPHTCVQCPDYPCVNACPTNALSVDEKT
GAVVVNEEKCITCGACVLACPGKVPRIPAGKGSVVICDLCGGNPKCVEICHEAGHDALKIVTGNYRPIYRTFAKDPQEKS
LDIARKVFGEDF

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI87082179, Length=145, Percent_Identity=37.2413793103448, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788811, Length=153, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=134, Percent_Identity=35.8208955223881, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789067, Length=147, Percent_Identity=34.0136054421769, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082180, Length=131, Percent_Identity=34.3511450381679, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787872, Length=144, Percent_Identity=32.6388888888889, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787122, Length=144, Percent_Identity=31.9444444444444, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787963, Length=148, Percent_Identity=29.0540540540541, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 18896; Mature: 18765

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
9.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEVQERIWILITPDKCSGCRLCEVTCSLEHEGIIWPEASRIRVFELFPGINVPHTCVQ
CCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCEEE
CPDYPCVNACPTNALSVDEKTGAVVVNEEKCITCGACVLACPGKVPRIPAGKGSVVICDL
CCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEECEEEEECCCCCCCCCCCCCCEEEEEC
CGGNPKCVEICHEAGHDALKIVTGNYRPIYRTFAKDPQEKSLDIARKVFGEDF
CCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SEEVQERIWILITPDKCSGCRLCEVTCSLEHEGIIWPEASRIRVFELFPGINVPHTCVQ
CCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCEEE
CPDYPCVNACPTNALSVDEKTGAVVVNEEKCITCGACVLACPGKVPRIPAGKGSVVICDL
CCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEECEEEEECCCCCCCCCCCCCCEEEEEC
CGGNPKCVEICHEAGHDALKIVTGNYRPIYRTFAKDPQEKSLDIARKVFGEDF
CCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]