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The map label for this gene is rpl40e [H]

Identifier: 18977847

GI number: 18977847

Start: 1379965

End: 1380120

Strand: Direct

Name: rpl40e [H]

Synonym: PF1475

Alternate gene names: 18977847

Gene position: 1379965-1380120 (Clockwise)

Preceding gene: 18977845

Following gene: 18977850

Centisome position: 72.32

GC content: 48.72

Gene sequence:

>156_bases
ATGGCGAGGTTCCCAGAAGCAGAGGCGAGAATATTCAAAAAGTACGTGTGCTTAAGATGTGGAGCAACTAACCCATGGGG
AGCCAAAAAGTGCAGAAAGTGCGGATACAAGAGGCTAAGGCCAAAAGCTAAAGAACCAAGAGGAGGAGGACGCTGA

Upstream 100 bases:

>100_bases
CAGTCCGAATAATAACAGAGCAACTTTCCCAATCATATGTTCCCCCTAGAGAAGCAAACTTTAAAAAAGTGCGTCTCAAC
TTTTAGCCAGGTGGTTAAAG

Downstream 100 bases:

>100_bases
TTACGACTTCAGCATGTTTAAAACGTCCTCTATTGTTTCTATTCCCTTTTCCAGTAACTTTTCTCCTTTTTCCGTAAGTC
TATAGTACTTTCTCGAAGGT

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR

Sequences:

>Translated_51_residues
MARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR
>Mature_50_residues
ARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5842; Mature: 5711

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
8.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR
CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]