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The map label for this gene is smf [H]

Identifier: 18977685

GI number: 18977685

Start: 1238066

End: 1238719

Strand: Direct

Name: smf [H]

Synonym: PF1313

Alternate gene names: 18977685

Gene position: 1238066-1238719 (Clockwise)

Preceding gene: 18977684

Following gene: 18977686

Centisome position: 64.88

GC content: 39.76

Gene sequence:

>654_bases
TTGACTCAAAAAAAGCTTATCGAATACACCAACCCAAGCACCTCTAGAAGGAAGATCACCAGGATACCAATTGATTCCCC
CGATTATCCCCCTCTTTTAAAACAGATAAAAGATCCTCCGAAGATAATTTATGCTATTGGCAACGTTAGATTACTAAACA
AACCAGCAGTTGCAATTGTAGGCACAAGACAGCCTAGTGAGAGGGGAGAGTATTATGCTGAAAAAGTAGCCGAATTTTAT
GCAAAACAAGGATTTGTTATTGTTTCTGGCCTCGCTTTGGGTATTGATTCAATTGTCATAAAGACTGCTTTGAAGACTGG
GGCCCATGTAATTGGCGTTCTTCCGTCTCCTGTAAACGATATTGTGCCAAAAAGCAACGAAAAACTTGCTGAGAAGATAA
TTAGAAGTGGAGGTCTTCTTATTTCGGAGCTACCTGAAGGTACTAAACCGAAAAAGTATCATTTTGTCCGCAGGAATAGG
ATAATTAGTGGGATTTCATTTGCTGTAGTGGTCATTGAATCTGAGTTGAAAGACGGGACAATGCACACAGTGAAATTTGC
CAAACAACAGAGGAGGATTATTCTGGTAACTAATCTTCCAGCTAGTGGGAATGCAAAGCTCAAAAATGAGGGCTTTCCAA
TTTTAGACTTCTAA

Upstream 100 bases:

>100_bases
ACAGGCGATACCGCAAGAGCATGTGTAAGAATAATTTTTGAATGTGGGGCATCGAAAGTGTATTTAATTACTTTGGCAAG
GACAAAATTGGTGAGGTAAC

Downstream 100 bases:

>100_bases
AGGCTTTGCAAGGCAGTAGTGTTGTGAGAGCATTACCTCCTGATGTCCTCAAAGGTAACATCCTCTAAGTCAGTTGAAAT
CATAACCATGATCGCTCAAA

Product: DNA processing SMF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTQKKLIEYTNPSTSRRKITRIPIDSPDYPPLLKQIKDPPKIIYAIGNVRLLNKPAVAIVGTRQPSERGEYYAEKVAEFY
AKQGFVIVSGLALGIDSIVIKTALKTGAHVIGVLPSPVNDIVPKSNEKLAEKIIRSGGLLISELPEGTKPKKYHFVRRNR
IISGISFAVVVIESELKDGTMHTVKFAKQQRRIILVTNLPASGNAKLKNEGFPILDF

Sequences:

>Translated_217_residues
MTQKKLIEYTNPSTSRRKITRIPIDSPDYPPLLKQIKDPPKIIYAIGNVRLLNKPAVAIVGTRQPSERGEYYAEKVAEFY
AKQGFVIVSGLALGIDSIVIKTALKTGAHVIGVLPSPVNDIVPKSNEKLAEKIIRSGGLLISELPEGTKPKKYHFVRRNR
IISGISFAVVVIESELKDGTMHTVKFAKQQRRIILVTNLPASGNAKLKNEGFPILDF
>Mature_216_residues
TQKKLIEYTNPSTSRRKITRIPIDSPDYPPLLKQIKDPPKIIYAIGNVRLLNKPAVAIVGTRQPSERGEYYAEKVAEFYA
KQGFVIVSGLALGIDSIVIKTALKTGAHVIGVLPSPVNDIVPKSNEKLAEKIIRSGGLLISELPEGTKPKKYHFVRRNRI
ISGISFAVVVIESELKDGTMHTVKFAKQQRRIILVTNLPASGNAKLKNEGFPILDF

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=171, Percent_Identity=39.766081871345, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR010994 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 23997; Mature: 23865

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQKKLIEYTNPSTSRRKITRIPIDSPDYPPLLKQIKDPPKIIYAIGNVRLLNKPAVAIV
CCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCEEEECCCEEEEE
GTRQPSERGEYYAEKVAEFYAKQGFVIVSGLALGIDSIVIKTALKTGAHVIGVLPSPVND
ECCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
IVPKSNEKLAEKIIRSGGLLISELPEGTKPKKYHFVRRNRIISGISFAVVVIESELKDGT
HCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCC
MHTVKFAKQQRRIILVTNLPASGNAKLKNEGFPILDF
HHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TQKKLIEYTNPSTSRRKITRIPIDSPDYPPLLKQIKDPPKIIYAIGNVRLLNKPAVAIV
CCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCEEEECCCEEEEE
GTRQPSERGEYYAEKVAEFYAKQGFVIVSGLALGIDSIVIKTALKTGAHVIGVLPSPVND
ECCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
IVPKSNEKLAEKIIRSGGLLISELPEGTKPKKYHFVRRNRIISGISFAVVVIESELKDGT
HCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCC
MHTVKFAKQQRRIILVTNLPASGNAKLKNEGFPILDF
HHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]