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The map label for this gene is 18977670

Identifier: 18977670

GI number: 18977670

Start: 1223841

End: 1224350

Strand: Reverse

Name: 18977670

Synonym: PF1298

Alternate gene names: NA

Gene position: 1224350-1223841 (Counterclockwise)

Preceding gene: 18977671

Following gene: 18977669

Centisome position: 64.16

GC content: 40.39

Gene sequence:

>510_bases
ATGAGAGCCAAAATAGCTGTAGTCCTAATTTTATTTCTCTTCTTTAGTGGGTGCACAAGCAGAGAGAATGAGCTTCGAGG
AAAAGTCGTGGGAGTTGTAGATGGAGATACTGTCTATGTAGAGCTTGAGAGTGGGGGAAAAGTCAAGGTTAGGCTTGTGG
GTATAGATGCTCCCGAGTTAGAGGAAGAAATAATGAGGCCTGGGGAGTATGGAAACATAACCAACACCTCATGCCTTCTC
AAATATGGGAAGATTGCAAAGGATTACCTCAGGAACTTAACCCTGGGCAAGGAAGTTGTTCTCATAATGGATAGATATCA
AGGTGAGCGGGATAAATATGGAAGATTGCTCGCTTACCTCTATTTAGATTCAACTGATGTCAACGAGCTTATGGTGGAGA
AAGGACTTGCTAGAGTATTCTATGAGAAAAAATTTGAAAAAATGAAGGAATATTTAAAGAAAGAAGAAATAGCGAGAGAA
AACCGATATGGGTTGTGGAGTTGTAGTTAA

Upstream 100 bases:

>100_bases
TAGATAAGATAGGGAAGGGCCAAGTGCCTCCAAGCATGTGCTATGAGATGGAGCTTGAAGCTGTTAAAGTAGCCATAGAG
GTTGCGCTCGAGGAGTTGTT

Downstream 100 bases:

>100_bases
GTTTTTAATTGGAATTTTACTCCATGGTATCGATGAACATGTTTGAGGAAGTTGAAGTTGAGGCCTATGTTTATCCCACA
GAAGATATAGAAAAGGTAAA

Product: putative endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRAKIAVVLILFLFFSGCTSRENELRGKVVGVVDGDTVYVELESGGKVKVRLVGIDAPELEEEIMRPGEYGNITNTSCLL
KYGKIAKDYLRNLTLGKEVVLIMDRYQGERDKYGRLLAYLYLDSTDVNELMVEKGLARVFYEKKFEKMKEYLKKEEIARE
NRYGLWSCS

Sequences:

>Translated_169_residues
MRAKIAVVLILFLFFSGCTSRENELRGKVVGVVDGDTVYVELESGGKVKVRLVGIDAPELEEEIMRPGEYGNITNTSCLL
KYGKIAKDYLRNLTLGKEVVLIMDRYQGERDKYGRLLAYLYLDSTDVNELMVEKGLARVFYEKKFEKMKEYLKKEEIARE
NRYGLWSCS
>Mature_169_residues
MRAKIAVVLILFLFFSGCTSRENELRGKVVGVVDGDTVYVELESGGKVKVRLVGIDAPELEEEIMRPGEYGNITNTSCLL
KYGKIAKDYLRNLTLGKEVVLIMDRYQGERDKYGRLLAYLYLDSTDVNELMVEKGLARVFYEKKFEKMKEYLKKEEIARE
NRYGLWSCS

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 19444; Mature: 19444

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01123 TNASE_1 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKIAVVLILFLFFSGCTSRENELRGKVVGVVDGDTVYVELESGGKVKVRLVGIDAPEL
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCHH
EEEIMRPGEYGNITNTSCLLKYGKIAKDYLRNLTLGKEVVLIMDRYQGERDKYGRLLAYL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHEEEEE
YLDSTDVNELMVEKGLARVFYEKKFEKMKEYLKKEEIARENRYGLWSCS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MRAKIAVVLILFLFFSGCTSRENELRGKVVGVVDGDTVYVELESGGKVKVRLVGIDAPEL
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCHH
EEEIMRPGEYGNITNTSCLLKYGKIAKDYLRNLTLGKEVVLIMDRYQGERDKYGRLLAYL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHEEEEE
YLDSTDVNELMVEKGLARVFYEKKFEKMKEYLKKEEIARENRYGLWSCS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]