Click here to switch to the map view.

The map label for this gene is 18977572

Identifier: 18977572

GI number: 18977572

Start: 1142268

End: 1142747

Strand: Reverse

Name: 18977572

Synonym: PF1200

Alternate gene names: NA

Gene position: 1142747-1142268 (Counterclockwise)

Preceding gene: 18977573

Following gene: 18977571

Centisome position: 59.88

GC content: 44.17

Gene sequence:

>480_bases
ATGAAGGCTGAGAGCATTCTATACTCACTGATTTCAGTCTTAAAACCTTTTCGCCGCAACAAAATCCCACCAGAAAAGAA
AATCAGAGCAGTAGAACTATACCTGCGAGGCCTCAGCTACAGACAAGTCGGAAAAATCCTCAAAATCAGCCACACAACAG
TCTGGGAGGCAGTTCAAAAACTAGCAGAAGCAGTTTACCAGCCAACACTCCTCGCAGTAAGAAAACAGAGGAATTTTATC
GCAGTTGATGAGACTGTCGTAAAAATCAACGGGGAGAAGAGATTTCTCTGGGCTGCACTTGACGTTGAGAGCAGGGAAGT
TCTCGCAGTCTGGATTACAACAACCAGAAACTGGTGGATTGCTAGAGACTTCATTCTGGTTGTTTTGAAATCCTGCAAGG
ACAGCCTGTTTTTCTGGTTGATGGTGGGAAGTGGTACAAGTCTGCTTTTAAATCCCTTGGACTGGATTTTGTTCACGTAA

Upstream 100 bases:

>100_bases
TTCTAATTGCGCTCTATAATTTTATCCGATACTGTTAGGATAAGCGGTAGGGCGTTAGGTTTAAGTTTCTGATAATTTTT
CAGAAAAAGAAGGGAGAGAA

Downstream 100 bases:

>100_bases
CCTTCGGGCCGAGGAACTGTATTGAACGCTGGTTTAGGACTTTAAAAGAAAGAACAAAGCGTTTCTGGAATAATTTCAGG
GCTAGAGACTGGAGGAGGGT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQKLAEAVYQPTLLAVRKQRNFI
AVDETVVKINGEKRFLWAALDVESREVLAVWITTTRNWWIARDFILVVLKSCKDSLFFWLMVGSGTSLLLNPLDWILFT

Sequences:

>Translated_159_residues
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQKLAEAVYQPTLLAVRKQRNFI
AVDETVVKINGEKRFLWAALDVESREVLAVWITTTRNWWIARDFILVVLKSCKDSLFFWLMVGSGTSLLLNPLDWILFT
>Mature_159_residues
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQKLAEAVYQPTLLAVRKQRNFI
AVDETVVKINGEKRFLWAALDVESREVLAVWITTTRNWWIARDFILVVLKSCKDSLFFWLMVGSGTSLLLNPLDWILFT

Specific function: Unknown

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18479; Mature: 18479

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQK
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHEECHHHHHHHHHH
LAEAVYQPTLLAVRKQRNFIAVDETVVKINGEKRFLWAALDVESREVLAVWITTTRNWWI
HHHHHHCCHHHHHHHCCCEEEECEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCEEH
ARDFILVVLKSCKDSLFFWLMVGSGTSLLLNPLDWILFT
HHHHHHHHHHHCCHHEEEEEEECCCCEEEECCHHHEEEC
>Mature Secondary Structure
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQK
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHEECHHHHHHHHHH
LAEAVYQPTLLAVRKQRNFIAVDETVVKINGEKRFLWAALDVESREVLAVWITTTRNWWI
HHHHHHCCHHHHHHHCCCEEEECEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCEEH
ARDFILVVLKSCKDSLFFWLMVGSGTSLLLNPLDWILFT
HHHHHHHHHHHCCHHEEEEEEECCCCEEEECCHHHEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]