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The map label for this gene is rbcL [H]

Identifier: 18977528

GI number: 18977528

Start: 1104585

End: 1105847

Strand: Reverse

Name: rbcL [H]

Synonym: PF1156

Alternate gene names: 18977528

Gene position: 1105847-1104585 (Counterclockwise)

Preceding gene: 18977530

Following gene: 161484709

Centisome position: 57.95

GC content: 44.73

Gene sequence:

>1263_bases
ATGAAGGTTGAGTGGTATTTAGACTTCGTTGACTTGGACTACACTCCAGGTAGAGATGAGTTAATTGTGGAGTATTACTT
TGAACCAAACGGGGTTTCTCCAGAAGAAGCAGCCGGAAGGATAGCTAGTGAAAGCTCTATAGGAACGTGGACAACTCTCT
GGAAAATGCCCGAAATGGCTAAGAGGAGTATGGCTAAGGTATTTTATCTAGAAAAAAGTGGGGAGGGATATATTGCTAAG
ATTGCATACCCATTAACGCTTTTCGAAGAAGGAAGCATAGTTCAACTTTTGAGTGCGATAGCTGGGAACATCTTCGGAAT
GAAAGCGTTAAAGAATTTGAGGCTTCTGGACTTCCATCCCCCTTATGAGTATCTGAGACATTTCAAAGGGCCACAGTATG
GTGTAAAGGGAATTAGAGAATTCATGGGGGTTAAAGAGAGACCTTTGACTGCTACCGTTCCGAAGCCTAAGATGGGATGG
AGTGTTGATGAATACGCGGAGATAGCATATGAACTCTGGAGTGGAGGGATCGATCTGTTAAAAGACGATGAAAACTTCAC
TAGCTTTCCATTCAACAGATTTGAAGAGAGAGTGAAAAAATTATATAGGATTAGGGATATCGTGGAGGCTGAAACTGAGG
AAAGAAAAGAGTACCTAATCAACATTACTGGATCCGTTGATGTTATGGAGAAAAGAGCCGAACTAGTGGCGAATGAGGGA
GGGCAGTACGTTATGATAGACATAATAGTCACTGGATGGAGCGCACTCCAGTACATGAGAGAGGTAACTGAGGATCTTGG
ATTGGCTATACATGCCCACAGAGCCATGCATGCCGCGTTCACTAGAAATCCCAAGCACGGGATAACGATGTATGCAATAG
CCAAGCTTGCCAGAATGATTGGCGTTGATCAAATTCACACGGGGACTGCAGTTGGAAAGATGGCAGGTGATTATGAGGAG
GTTAAAAGGATAAACGACTTCCTACTTAGTAAATGGGAGCACATAAGAGAAGTTTTCCCAGTAGCAAGTGGGGGACTTCA
CCCTGGATTGATGCCAGAGCTTATACGTCTCTTCGGGAAAGATCTCGTTATTCAAGCGGGTGGAGGAGTTATGGGGCACC
CAGATGGGCCCAGGGCTGGAGCTAAAGCCTTGAGAGATGCAATAGATGCGGCTTTAGAAGGGGTTGATTTAGAGGAGAAG
GCAAAGTCGAGTCCAGAGCTGAAAAAGGCATTAGACAAGTGGGGCTACCTAAAGCCTAAATGA

Upstream 100 bases:

>100_bases
ATTCCCCACTCTTTGAAGGTTAGTCTTGCTTACTTTATAAAGATAAACGTAAAGATAAACGTTATGAGGAACAAAAACAG
AGTATGTATTGGTGTTTTTT

Downstream 100 bases:

>100_bases
GCTAGATGTATTCAAACTCTCTCGTCATTAAATCTTCAAGGAGGGCTTTGACCCAGGGGCGCCGAGTGCGGAGTGAGAGA
TGAATAATTCCCTCCACGTG

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO [H]

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMAKRSMAKVFYLEKSGEGYIAK
IAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHPPYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGW
SVDEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMIGVDQIHTGTAVGKMAGDYEE
VKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEK
AKSSPELKKALDKWGYLKPK

Sequences:

>Translated_420_residues
MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMAKRSMAKVFYLEKSGEGYIAK
IAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHPPYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGW
SVDEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMIGVDQIHTGTAVGKMAGDYEE
VKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEK
AKSSPELKKALDKWGYLKPK
>Mature_420_residues
MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMAKRSMAKVFYLEKSGEGYIAK
IAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHPPYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGW
SVDEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMIGVDQIHTGTAVGKMAGDYEE
VKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEK
AKSSPELKKALDKWGYLKPK

Specific function: Unknown

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type III subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017712
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 47348; Mature: 47348

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMA
CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHCCHHHH
KRSMAKVFYLEKSGEGYIAKIAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHP
HHHHHHEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
PYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGWSVDEYAEIAYELWSGGIDLL
CHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE
KDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCC
GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMI
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GVDQIHTGTAVGKMAGDYEEVKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGK
CCHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
DLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEKAKSSPELKKALDKWGYLKPK
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMA
CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHCCHHHH
KRSMAKVFYLEKSGEGYIAKIAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHP
HHHHHHEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
PYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGWSVDEYAEIAYELWSGGIDLL
CHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE
KDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCC
GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMI
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GVDQIHTGTAVGKMAGDYEEVKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGK
CCHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
DLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEKAKSSPELKKALDKWGYLKPK
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]