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The map label for this gene is 18977408

Identifier: 18977408

GI number: 18977408

Start: 991090

End: 991452

Strand: Direct

Name: 18977408

Synonym: PF1036

Alternate gene names: NA

Gene position: 991090-991452 (Clockwise)

Preceding gene: 18977407

Following gene: 18977409

Centisome position: 51.94

GC content: 39.94

Gene sequence:

>363_bases
ATGATAGGGAGAGGCAAACTCGGGGAAAAGTACATAACGATAGCTGAAGCAAAGGAATTATTACTAAAAAGGCGCGAAGA
AGAAGTAAAAGCTGGAATAGAGGAACCTCTATACTATGAAGCGAGGTTAGCTTTAGAACATGCTGAAAGATTTGCAAAGC
TTCCAGCAGATAAGGCCAAAGAGGCAGTAGAGGAGCTTATGAATGCCTTTGAATGGATGAGTGACAGAATTGCCTGCAAA
ATAGTTGACATCATGCCAGAAGACAGTATGGATCTAAGAGTTATATTTGCCAAGGAAGAATATCAACCAACACAGGAAGA
GATGAAGCAAATCTTAGATATCCTTGACAAGTATAGAGAGTGA

Upstream 100 bases:

>100_bases
GAAGAGGGGAGAAGCCTACATCGTGGAAATTAAAGACGGGAGCAAGGTAAAGACGCTCTTCATTCATCCAGTACATCTCA
GACCACAGAAGTGACGGGCT

Downstream 100 bases:

>100_bases
CTATTCCTCCCGGTTTTTTCCTTAAATTTTTCTTATTACTCTGGCGAATGGAAACGGTTTTATATCCCTTTTTCTAACTA
AACTATGGGTGAAATTTATG

Product: hypothetical protein

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAKEAVEELMNAFEWMSDRIACK
IVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE

Sequences:

>Translated_120_residues
MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAKEAVEELMNAFEWMSDRIACK
IVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE
>Mature_120_residues
MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAKEAVEELMNAFEWMSDRIACK
IVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010997
- InterPro:   IPR015906
- InterPro:   IPR015907
- InterPro:   IPR005574 [H]

Pfam domain/function: PF03874 RNA_pol_Rpb4 [H]

EC number: 2.7.7.6

Molecular weight: Translated: 14095; Mature: 14095

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
EAVEELMNAFEWMSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
EAVEELMNAFEWMSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]