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The map label for this gene is ydcM [C]

Identifier: 18977387

GI number: 18977387

Start: 971045

End: 972259

Strand: Reverse

Name: ydcM [C]

Synonym: PF1015

Alternate gene names: 18977387

Gene position: 972259-971045 (Counterclockwise)

Preceding gene: 33359533

Following gene: 18977386

Centisome position: 50.95

GC content: 42.14

Gene sequence:

>1215_bases
ATGCCGAGTGAAACAATTAAACTTACTGCAAAATTCAAACTCAAGGAGATACCTAATGGGTTAGATGTTCTCTTCTCGAC
TTATCGGGAGATTGTGAACTTTCTAATTTCTTATGCATATGAAAACAACATTACTAGCTTTTATAGGCTTAAAAAGGAAA
CGTACAAAAACCTCCGCAAGGAGTATCCTGAATTACCAAGCCACTATCACTATACAGCCATAGATATGGCTACTAAAATT
TACAGGGGTTACCGCAAGAGGAGGGGTAAGGCTAAGGGTAAGCCAGTTTTCAAGAAGGAAGTTATAATGCTCGACGATCA
TCTCTTCAAGCTAGACTTTGAAAAAAGAATAGTAAAACTCTCCACTCCGAGTGGAAGGATTGAGTTAGAATTCTATCCAG
CAAAATATCACGAGAAGTTTAAGGGTTGGAAGGTAGGCCAAGCTTGGCTAGTAAAGACTCCAAAAGGTCTCTTCATTAAC
GTTGTATTCTCCAGAGAGGTTGAAATTAGAGAGCCTGAAAACTTTATCGGCGTGGATTTGAATGAGAATAATGTAACGCT
CTGCCTTCCAAAGGGTGAGTTTATCCAAATAATTACCCATGAGAGGGAGATAAGGACTGGCTATTTTGTAAAGCGGAGAA
AGATTCAGAAGAATCTTAGGGTTGGAAAGAAGAGGGAAGAGCTTCTCGAAAAGTATGGGAGTAGGGAGAGGAATAGAGTG
GATGACCTTTATCACAAATTAGCCAATAAAATTGTTGAATTGGCTGAGAAATACGGTGGTATTGCCTTGGAGGATTTAAC
AGAAATAAGGGATTCAATTAGGTATTCGGCTGAATTGAATGGTCGTCTTCATCGCTGGAGTTTTAGGAAACTCCAGCGCA
TAATCGAATACAAGGCGAAATTAAGGGGTATAAAAGTTATTTTCGTTAACCCCGCTTATACTTCCACCCTGTGCCCGATA
TGTGGGGGTAAGTTAAGCCCGAATGGGCACAGGGTTTTGAAATGCAAATGTGGTTTTGAGGCTGATAGGGATGTTGTTGG
AAGTTGGAATGTTCGCTTGAAAGCCTTGAAGATGTGGGGAGTCACCGTTCCCCCCGAAAGCCACCCGATGAAGAAGGGAG
GGTGGAAGGTCAGCCGTATCGACATTACACAAATCACGGCTGACCAGAACGGTTACTTTATGCGGCGGCTGAGGAGGGCT
CTTTTGTTGCAGTAG

Upstream 100 bases:

>100_bases
CTTGTTGCCCTAAAATACGGGACACGAAAGGGGGTTCTTGGAGCGGCAATAAGCGAGGCCATAAAAATGTGGATCAGAAA
AACCAAGAAGGAGCTAGAAA

Downstream 100 bases:

>100_bases
TCTTACTTGTTATGATGTCTCTCCCAGAGAAATTTAAGCGTACGATTGACTGGATTATAATTGTCATTTCCTCATTATTC
CTGAACTCATATCTCATTTA

Product: putative transposase b - like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPSETIKLTAKFKLKEIPNGLDVLFSTYREIVNFLISYAYENNITSFYRLKKETYKNLRKEYPELPSHYHYTAIDMATKI
YRGYRKRRGKAKGKPVFKKEVIMLDDHLFKLDFEKRIVKLSTPSGRIELEFYPAKYHEKFKGWKVGQAWLVKTPKGLFIN
VVFSREVEIREPENFIGVDLNENNVTLCLPKGEFIQIITHEREIRTGYFVKRRKIQKNLRVGKKREELLEKYGSRERNRV
DDLYHKLANKIVELAEKYGGIALEDLTEIRDSIRYSAELNGRLHRWSFRKLQRIIEYKAKLRGIKVIFVNPAYTSTLCPI
CGGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLKALKMWGVTVPPESHPMKKGGWKVSRIDITQITADQNGYFMRRLRRA
LLLQ

Sequences:

>Translated_404_residues
MPSETIKLTAKFKLKEIPNGLDVLFSTYREIVNFLISYAYENNITSFYRLKKETYKNLRKEYPELPSHYHYTAIDMATKI
YRGYRKRRGKAKGKPVFKKEVIMLDDHLFKLDFEKRIVKLSTPSGRIELEFYPAKYHEKFKGWKVGQAWLVKTPKGLFIN
VVFSREVEIREPENFIGVDLNENNVTLCLPKGEFIQIITHEREIRTGYFVKRRKIQKNLRVGKKREELLEKYGSRERNRV
DDLYHKLANKIVELAEKYGGIALEDLTEIRDSIRYSAELNGRLHRWSFRKLQRIIEYKAKLRGIKVIFVNPAYTSTLCPI
CGGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLKALKMWGVTVPPESHPMKKGGWKVSRIDITQITADQNGYFMRRLRRA
LLLQ
>Mature_403_residues
PSETIKLTAKFKLKEIPNGLDVLFSTYREIVNFLISYAYENNITSFYRLKKETYKNLRKEYPELPSHYHYTAIDMATKIY
RGYRKRRGKAKGKPVFKKEVIMLDDHLFKLDFEKRIVKLSTPSGRIELEFYPAKYHEKFKGWKVGQAWLVKTPKGLFINV
VFSREVEIREPENFIGVDLNENNVTLCLPKGEFIQIITHEREIRTGYFVKRRKIQKNLRVGKKREELLEKYGSRERNRVD
DLYHKLANKIVELAEKYGGIALEDLTEIRDSIRYSAELNGRLHRWSFRKLQRIIEYKAKLRGIKVIFVNPAYTSTLCPIC
GGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLKALKMWGVTVPPESHPMKKGGWKVSRIDITQITADQNGYFMRRLRRAL
LLQ

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47474; Mature: 47343

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSETIKLTAKFKLKEIPNGLDVLFSTYREIVNFLISYAYENNITSFYRLKKETYKNLRK
CCCCEEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EYPELPSHYHYTAIDMATKIYRGYRKRRGKAKGKPVFKKEVIMLDDHLFKLDFEKRIVKL
HCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCEEEEEHHHEEEEE
STPSGRIELEFYPAKYHEKFKGWKVGQAWLVKTPKGLFINVVFSREVEIREPENFIGVDL
ECCCCEEEEEEECCHHHHHCCCCCCCCEEEEECCCCEEEEEEEECEEEEECCCCEEEEEE
NENNVTLCLPKGEFIQIITHEREIRTGYFVKRRKIQKNLRVGKKREELLEKYGSRERNRV
CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
DDLYHKLANKIVELAEKYGGIALEDLTEIRDSIRYSAELNGRLHRWSFRKLQRIIEYKAK
HHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHH
LRGIKVIFVNPAYTSTLCPICGGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLKALKMWG
HCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
VTVPPESHPMKKGGWKVSRIDITQITADQNGYFMRRLRRALLLQ
CCCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PSETIKLTAKFKLKEIPNGLDVLFSTYREIVNFLISYAYENNITSFYRLKKETYKNLRK
CCCEEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EYPELPSHYHYTAIDMATKIYRGYRKRRGKAKGKPVFKKEVIMLDDHLFKLDFEKRIVKL
HCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCEEEEEHHHEEEEE
STPSGRIELEFYPAKYHEKFKGWKVGQAWLVKTPKGLFINVVFSREVEIREPENFIGVDL
ECCCCEEEEEEECCHHHHHCCCCCCCCEEEEECCCCEEEEEEEECEEEEECCCCEEEEEE
NENNVTLCLPKGEFIQIITHEREIRTGYFVKRRKIQKNLRVGKKREELLEKYGSRERNRV
CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
DDLYHKLANKIVELAEKYGGIALEDLTEIRDSIRYSAELNGRLHRWSFRKLQRIIEYKAK
HHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHH
LRGIKVIFVNPAYTSTLCPICGGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLKALKMWG
HCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
VTVPPESHPMKKGGWKVSRIDITQITADQNGYFMRRLRRALLLQ
CCCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]