Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 18977372

GI number: 18977372

Start: 956635

End: 957768

Strand: Reverse

Name: oppC [H]

Synonym: PF1000

Alternate gene names: 18977372

Gene position: 957768-956635 (Counterclockwise)

Preceding gene: 18977373

Following gene: 18977371

Centisome position: 50.19

GC content: 38.36

Gene sequence:

>1134_bases
ATGAAGAGGAAAATCGGAGTAGTATTGCTTGTTCTCCTGGGTCTCTTTGTAGTTTTGTCAAATCTCAGTGTAAGTAGTGA
TGAAATTGCCAATTGGGTAAACACTAATTATTGGAGAAACAATCCCAAAAAAGCCTATCCATCTTGGTACTGCCTATTTA
GTGAGAGAACACCCACAGTTTTCCTAAAGGGTTCAGAGATTGAAAGAGATGGTTTTAGAATGTATCAATTCCTTTACAAT
CACACATACAAAGACGAACCAAGTGACATTAGGTTTTATAATCTTTCCCAGGGAGAAAAGGTTGAAATTGTAGTTCTAAG
ACCTGATGGAATATTGGTTCCTCTTTACAATGACACTGCAATAAGTAGCAATTTAACTCTGAACATCGACATGAGAATGG
AGGTAATCTCTACCATTTCTAGTGTTTTCAATCTTAGCAGAGAAGAATATGTTTTCACTCCTCCAACTAAGCTTCTTTTT
TCTAGCTACAAAGGAAAAACCCTCAAAGGAGAATATGTATTTGAAATTCGAATAAGGGGAAACTCCACGTCATTTGTTGA
AATCCTTGGAACTTGCTATGGCATCCTGGGAACAGACTCTTACGGTAGAGACATGTGGGTTGGATTTGTTAAAGGAATGA
ACAACACACTCTATTTTGCATTCTCCACTACTTTCATCACAGTAGTCTTAGGAGCTTTGCTAGGTCTTCTCTCAGGCTAT
TTCGAGGGAAGAGTGGCTGGACTATTAACTTTTTTGCTGGAGGTCTTGATAGCTCTTCCAATGCTTCCTTTCCTTGTCCT
TCTTGTCTGGCTTTCATCAACTCAGGGAGTAGGCCTCGAAGTAGAAATAAACCCGTTGGTTTTAATGCTTTTTATCGCCA
TTCTATCCTTAGGAAAGTTTGCAAAAACAGTTAGAATGATAGTTATGAAAGAAAAAGTAAGTGAATACGTCAAAGCCTCA
ATAAGTGTAGGTGCTAGCTCGTTGTGGATTATAAGAAGGCATATATTTCCAGTTATTAGAGAATTCTCTTTCAGACACTT
CACTATTCTTCTTCCAAAGATGGTTGCTCTTGTCTCCGTTCTTGGATTCTTTGGCCTTATTCCAGGGACTAATTGGGGGG
TCTTTCATGATTGA

Upstream 100 bases:

>100_bases
CTCTTTTTTGTAGTTGCTCTCTTAATATCTGCCATATCTTTCATACTATCACTTCTGCTCGAACTCCTTAAAGGAATACT
TGATCCGAGGGTGAGCTAAA

Downstream 100 bases:

>100_bases
TGCAATGAATGAGGGAGCAATCTATGGCGGGTATTGGTGGTGGATACTTCCCCCAGGCCTTTTTATGGCAGCTTTAAGTG
CAAGTTTTGTCTTAATTTCT

Product: oligopeptide transport system permease protein appc

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKRKIGVVLLVLLGLFVVLSNLSVSSDEIANWVNTNYWRNNPKKAYPSWYCLFSERTPTVFLKGSEIERDGFRMYQFLYN
HTYKDEPSDIRFYNLSQGEKVEIVVLRPDGILVPLYNDTAISSNLTLNIDMRMEVISTISSVFNLSREEYVFTPPTKLLF
SSYKGKTLKGEYVFEIRIRGNSTSFVEILGTCYGILGTDSYGRDMWVGFVKGMNNTLYFAFSTTFITVVLGALLGLLSGY
FEGRVAGLLTFLLEVLIALPMLPFLVLLVWLSSTQGVGLEVEINPLVLMLFIAILSLGKFAKTVRMIVMKEKVSEYVKAS
ISVGASSLWIIRRHIFPVIREFSFRHFTILLPKMVALVSVLGFFGLIPGTNWGVFHD

Sequences:

>Translated_377_residues
MKRKIGVVLLVLLGLFVVLSNLSVSSDEIANWVNTNYWRNNPKKAYPSWYCLFSERTPTVFLKGSEIERDGFRMYQFLYN
HTYKDEPSDIRFYNLSQGEKVEIVVLRPDGILVPLYNDTAISSNLTLNIDMRMEVISTISSVFNLSREEYVFTPPTKLLF
SSYKGKTLKGEYVFEIRIRGNSTSFVEILGTCYGILGTDSYGRDMWVGFVKGMNNTLYFAFSTTFITVVLGALLGLLSGY
FEGRVAGLLTFLLEVLIALPMLPFLVLLVWLSSTQGVGLEVEINPLVLMLFIAILSLGKFAKTVRMIVMKEKVSEYVKAS
ISVGASSLWIIRRHIFPVIREFSFRHFTILLPKMVALVSVLGFFGLIPGTNWGVFHD
>Mature_377_residues
MKRKIGVVLLVLLGLFVVLSNLSVSSDEIANWVNTNYWRNNPKKAYPSWYCLFSERTPTVFLKGSEIERDGFRMYQFLYN
HTYKDEPSDIRFYNLSQGEKVEIVVLRPDGILVPLYNDTAISSNLTLNIDMRMEVISTISSVFNLSREEYVFTPPTKLLF
SSYKGKTLKGEYVFEIRIRGNSTSFVEILGTCYGILGTDSYGRDMWVGFVKGMNNTLYFAFSTTFITVVLGALLGLLSGY
FEGRVAGLLTFLLEVLIALPMLPFLVLLVWLSSTQGVGLEVEINPLVLMLFIAILSLGKFAKTVRMIVMKEKVSEYVKAS
ISVGASSLWIIRRHIFPVIREFSFRHFTILLPKMVALVSVLGFFGLIPGTNWGVFHD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787498, Length=181, Percent_Identity=32.0441988950276, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42695; Mature: 42695

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00027 HOMEOBOX_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKIGVVLLVLLGLFVVLSNLSVSSDEIANWVNTNYWRNNPKKAYPSWYCLFSERTPTV
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEE
FLKGSEIERDGFRMYQFLYNHTYKDEPSDIRFYNLSQGEKVEIVVLRPDGILVPLYNDTA
EEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCE
ISSNLTLNIDMRMEVISTISSVFNLSREEYVFTPPTKLLFSSYKGKTLKGEYVFEIRIRG
ECCCEEEEEEHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCCCEECCEEEEEEEEEC
NSTSFVEILGTCYGILGTDSYGRDMWVGFVKGMNNTLYFAFSTTFITVVLGALLGLLSGY
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
FEGRVAGLLTFLLEVLIALPMLPFLVLLVWLSSTQGVGLEVEINPLVLMLFIAILSLGKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
AKTVRMIVMKEKVSEYVKASISVGASSLWIIRRHIFPVIREFSFRHFTILLPKMVALVSV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGFFGLIPGTNWGVFHD
HHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRKIGVVLLVLLGLFVVLSNLSVSSDEIANWVNTNYWRNNPKKAYPSWYCLFSERTPTV
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEE
FLKGSEIERDGFRMYQFLYNHTYKDEPSDIRFYNLSQGEKVEIVVLRPDGILVPLYNDTA
EEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCE
ISSNLTLNIDMRMEVISTISSVFNLSREEYVFTPPTKLLFSSYKGKTLKGEYVFEIRIRG
ECCCEEEEEEHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCCCEECCEEEEEEEEEC
NSTSFVEILGTCYGILGTDSYGRDMWVGFVKGMNNTLYFAFSTTFITVVLGALLGLLSGY
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
FEGRVAGLLTFLLEVLIALPMLPFLVLLVWLSSTQGVGLEVEINPLVLMLFIAILSLGKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
AKTVRMIVMKEKVSEYVKASISVGASSLWIIRRHIFPVIREFSFRHFTILLPKMVALVSV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGFFGLIPGTNWGVFHD
HHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]