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The map label for this gene is rpoM [H]

Identifier: 18977358

GI number: 18977358

Start: 940318

End: 940650

Strand: Reverse

Name: rpoM [H]

Synonym: PF0986

Alternate gene names: 18977358

Gene position: 940650-940318 (Counterclockwise)

Preceding gene: 18977363

Following gene: 18977356

Centisome position: 49.29

GC content: 41.74

Gene sequence:

>333_bases
ATGGTGAAATTCTGCCCCAAATGTGGGAGTATTATGATACCCGACAGGAGGAGAGGAGTCTTTGTCTGTAGAAAATGTGG
TTATGAGGAACCTATAAATCCTGAGGACACCAAAGCATATAGAAGAACAGAAGAAGTCAAGCATAGGCCTGATGAAGGAG
TAGTTGTAATTGAACAAGAAGTTTCGACTCTTCCAACAGCAAAAGTAACCTGCCCAAAATGTGGGCATAATGAAGCATGG
TGGTGGGAACTTCAAACTAGGGCAGGAGATGAGCCAAGTACAATATTCTATAAGTGTAAGAAGTGTGGATACGTATGGAG
GAGTTACGAATAA

Upstream 100 bases:

>100_bases
TACTAATCTTCATACACCTTCCCTCCAAAGAATGGTGTAAGGTAAACTTTTTATTTTGAACGATTAAACTTTGCCCTTGG
CTAGTATGGGGGTGAGATAA

Downstream 100 bases:

>100_bases
AGGTTTTGACAAGATTAGCAGAGAAAGCTTTGAAGGAGCTAGAGGAAGCTTATAAAAGAATACCCGATACAGACAATGGA
AAAACTTATTTATTGAGGGG

Product: DNA-directed RNA polymerase subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MVKFCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQEVSTLPTAKVTCPKCGHNEAW
WWELQTRAGDEPSTIFYKCKKCGYVWRSYE

Sequences:

>Translated_110_residues
MVKFCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQEVSTLPTAKVTCPKCGHNEAW
WWELQTRAGDEPSTIFYKCKKCGYVWRSYE
>Mature_110_residues
MVKFCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQEVSTLPTAKVTCPKCGHNEAW
WWELQTRAGDEPSTIFYKCKKCGYVWRSYE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Homo sapiens, GI302058278, Length=113, Percent_Identity=35.3982300884956, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320250, Length=113, Percent_Identity=35.3982300884956, Blast_Score=67, Evalue=6e-13,
Organism=Drosophila melanogaster, GI78707272, Length=112, Percent_Identity=36.6071428571429, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12864; Mature: 12864

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKFCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQE
CCEECCCCCCEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC
VSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGYVWRSYE
CCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEECCC
>Mature Secondary Structure
MVKFCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQE
CCEECCCCCCEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC
VSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGYVWRSYE
CCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8171001; 9634694 [H]