Click here to switch to the map view.

The map label for this gene is yggB [C]

Identifier: 18977188

GI number: 18977188

Start: 796206

End: 797018

Strand: Reverse

Name: yggB [C]

Synonym: PF0816

Alternate gene names: 18977188

Gene position: 797018-796206 (Counterclockwise)

Preceding gene: 18977189

Following gene: 18977185

Centisome position: 41.77

GC content: 47.97

Gene sequence:

>813_bases
GTGGTGGCTCTTGACGAGCCTCTTCCTTATGTTGGAGTTACACCCATGCAAGTGTTAACTGCAATAGTAGTCTTAATAGT
GGGGTATATTGTGGCAAAGGTAGTCGTTGCTTCCTTCAAGCGAGGGCTCAAGAAAACAAAACTTCCCGAGCTTGTCGTGG
AATTCCTCGGAAGATTCCTCAGCGCACTCCTCTACGTGGCAGTAATACTACTCGCAGTTAGAGCCCTCGGTATCGAAGTT
GGATCAGTAGTCCTGGGCCTGTCAGCAGTGATAGGTTTAATCTTGGGCTTTGGAATGCAGGACACACTCACCAACCTAGC
AGCGGGCGTCTGGATAGCCGCCCTAAGACCCATTGACATTGGCGAAGTCGTTGAAGTTGCAGGAAAAGTTGGAAAAGTCA
ATGCCGTTGGCATAATGAGCACAGAACTGCTAACTGCAGACAATGTCCTCATAACAATCCCCAACAAACTCGTCTGGGGG
AACGTTATAACCAACTACACGAGAATGCCAACGAGGAGGGTTGACGTAAATGTTGGAGTGGCCTATGGTACAGACCTCGA
CAAGGCCATTAAAGTGGCCATGGAGCTAATGCAGAACCATCCAAAGGTTCTCAAAGACCCCGCTCCAGCAGTTGTTGTAA
CAGAACTTGGTGACTCATCAATAAACCTCCAGCTTAGGGCATGGGCGAAGACCGAGGACTACTGGACCGTTAAGTTCGAC
CTAACCAAAGGCATATACGAGGCTTACAGAAGAGAAGGCATAGAAATACCATTCCCACAATTAGACGTACACATAAAAGA
AATGCCAAAGTGA

Upstream 100 bases:

>100_bases
ACTCTTACCTGAATTGTTCGAAGTTTTGGCTAGGAATATTATAAGCTAAAGTCTTAAATTATATTTTGGATAAATATAGT
AATTGCCAGGAGGTGATAGT

Downstream 100 bases:

>100_bases
GGGGGTTTGTTCTTTACTTTTTTGTTTATTTTCAGTGACGGTCACTAACTTTACAGAGCTCTCCCGTTACTTACTATTCA
TAAGGAAGCTTTCATCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MVALDEPLPYVGVTPMQVLTAIVVLIVGYIVAKVVVASFKRGLKKTKLPELVVEFLGRFLSALLYVAVILLAVRALGIEV
GSVVLGLSAVIGLILGFGMQDTLTNLAAGVWIAALRPIDIGEVVEVAGKVGKVNAVGIMSTELLTADNVLITIPNKLVWG
NVITNYTRMPTRRVDVNVGVAYGTDLDKAIKVAMELMQNHPKVLKDPAPAVVVTELGDSSINLQLRAWAKTEDYWTVKFD
LTKGIYEAYRREGIEIPFPQLDVHIKEMPK

Sequences:

>Translated_270_residues
MVALDEPLPYVGVTPMQVLTAIVVLIVGYIVAKVVVASFKRGLKKTKLPELVVEFLGRFLSALLYVAVILLAVRALGIEV
GSVVLGLSAVIGLILGFGMQDTLTNLAAGVWIAALRPIDIGEVVEVAGKVGKVNAVGIMSTELLTADNVLITIPNKLVWG
NVITNYTRMPTRRVDVNVGVAYGTDLDKAIKVAMELMQNHPKVLKDPAPAVVVTELGDSSINLQLRAWAKTEDYWTVKFD
LTKGIYEAYRREGIEIPFPQLDVHIKEMPK
>Mature_270_residues
MVALDEPLPYVGVTPMQVLTAIVVLIVGYIVAKVVVASFKRGLKKTKLPELVVEFLGRFLSALLYVAVILLAVRALGIEV
GSVVLGLSAVIGLILGFGMQDTLTNLAAGVWIAALRPIDIGEVVEVAGKVGKVNAVGIMSTELLTADNVLITIPNKLVWG
NVITNYTRMPTRRVDVNVGVAYGTDLDKAIKVAMELMQNHPKVLKDPAPAVVVTELGDSSINLQLRAWAKTEDYWTVKFD
LTKGIYEAYRREGIEIPFPQLDVHIKEMPK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=257, Percent_Identity=34.2412451361868, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1786670, Length=181, Percent_Identity=32.5966850828729, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787591, Length=223, Percent_Identity=24.2152466367713, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367355, Length=201, Percent_Identity=23.3830845771144, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 29328; Mature: 29328

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALDEPLPYVGVTPMQVLTAIVVLIVGYIVAKVVVASFKRGLKKTKLPELVVEFLGRFL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SALLYVAVILLAVRALGIEVGSVVLGLSAVIGLILGFGMQDTLTNLAAGVWIAALRPIDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
GEVVEVAGKVGKVNAVGIMSTELLTADNVLITIPNKLVWGNVITNYTRMPTRRVDVNVGV
HHHHHHHHCCCCCEEEEEEHHHHEEECCEEEEECCCCEECHHHHHHHCCCCEEEEEEEEE
AYGTDLDKAIKVAMELMQNHPKVLKDPAPAVVVTELGDSSINLQLRAWAKTEDYWTVKFD
EECCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEE
LTKGIYEAYRREGIEIPFPQLDVHIKEMPK
HHHHHHHHHHHCCCCCCCCCCCCHHCCCCC
>Mature Secondary Structure
MVALDEPLPYVGVTPMQVLTAIVVLIVGYIVAKVVVASFKRGLKKTKLPELVVEFLGRFL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SALLYVAVILLAVRALGIEVGSVVLGLSAVIGLILGFGMQDTLTNLAAGVWIAALRPIDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
GEVVEVAGKVGKVNAVGIMSTELLTADNVLITIPNKLVWGNVITNYTRMPTRRVDVNVGV
HHHHHHHHCCCCCEEEEEEHHHHEEECCEEEEECCCCEECHHHHHHHCCCCEEEEEEEEE
AYGTDLDKAIKVAMELMQNHPKVLKDPAPAVVVTELGDSSINLQLRAWAKTEDYWTVKFD
EECCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEE
LTKGIYEAYRREGIEIPFPQLDVHIKEMPK
HHHHHHHHHHHCCCCCCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]