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The map label for this gene is yqhH [H]

Identifier: 18976936

GI number: 18976936

Start: 581261

End: 584083

Strand: Reverse

Name: yqhH [H]

Synonym: PF0564

Alternate gene names: 18976936

Gene position: 584083-581261 (Counterclockwise)

Preceding gene: 18976937

Following gene: 18976932

Centisome position: 30.61

GC content: 41.55

Gene sequence:

>2823_bases
TTGAAAGGGTTGTTTAGGGACGTTATCCTCCACAACCCCCACCTTTTTGTTTATTCCTATTCTGATAAAGGCATCATTCC
TTTCAAGCATCAGTTCCAGACCCTCTATCATGCCATGCTCATGAGGCCAGTGAGGCTAATGATAGCTGATGAGATAGGTC
TCGGAAAGACCATTCAAGCTCTTTTAATAGCCAAGTACCTCGATTTTAGGGGAGAGATTGAGAAAGCCTTGATAGTCGTT
CCAAAAGTTCTGAGGGAGCAGTGGAGGGAAGAAGTAAAGAGGATCTTAGAGGAAGCTCCGGAAGTGATAGAGAATGGTAG
CGAAATTGAATGGAAGTTGAAAAGGCCGAGGAAGTACTTCATAATATCAATAGACCTAGCTAAGAGATACACCGAGGAAA
TACTCCGTCAAAAGTGGGATTTAGTAATAGTTGACGAAGTCCACAACGCCACCCTGGGAACACAGAGATATGAGTTCTTA
AAAGAACTAACCAAGAACAAGGATTTGAACGTTATATTCCTTTCAGCAACCCCCCACAGGGGAAACAATAGAGATTACCT
TGCGAGGCTTAGGCTCCTCGACCCAACTATACCAGAGGAAATATCCCCAATGCACGAAAGGAAGATCTACATGAAGTCAA
GAGGGACATTGGTACTAAGGCGAACTAAGAAGGTTGTCAACGAACTTGAAGGAGAAGTGTTCAAGAAGTGTCACTTTGGG
GCTGTCGTGGTAGAAGTTAGCAGAGAGGAGAGGGAGTTCTTTGAAGAGTTAAATAGAGCGCTATTCGAGCTGATTAAGGA
TCAAGCTGATTACTCTCCCTTAACTCTTCTTGCAGTAATCATTAGGAAGAGAGCCTCGTCCAGCTACGAAGCGGCTCTAA
AAACCCTAACCAGGATCGTTGAAAGCGCTTATATAAGTGGGCAAGAAAGAGCCAGAGGCGTTGAATCATACATTGAAAAG
ATCTTTAGAATGGGGTATGAGGAATTGGAAATAGAAGAATTTAACGAGATAGATGATGCGATACACAAAATAATAGATGA
ATATAGGGGATTCTTAACTGAAGAGCAACTCGAAAGGCTTAGAAGAGTTCTCGAGCTTGGAAAGAAAATTGGCAGCAAGG
ATAGCAAGCTTGAGGTTATATCCGATATAGTTGCTTATCACATTAGGAACGGCGAAAAGGTCATAATATTCACGGAATTT
AGAGATACCCTCGAATACGTACTTGAGAGGTTACCAGATATCCTAAGGAGAAAGCACGGCATTGTTTTGGAAAAAGATGA
CATTGCAAAACTTCATGGGGGCATGAAATCTGAGGAAATAGAGAGGGAAATCAACAAGTTTCATGAAAGGGCTAACCTAT
TAGTCTCTACGGATGTTGCATCCGAAGGACTTAACCTGCACGTTGCAAGTGTTGTAATAAACTACGAGGCCCCCTGGAGC
CCAATAAAGCTCGAACAGAGGGTGGGAAGAATATGGAGGCTCAACCAAACGAGAGAAACCAAAGCATATACCATATTTCT
TGCAACGGAAACGGACTTGGATGTTCTAAACAACCTCTATAGAAAGATTATGAACATAAAGGAAGCCGTGGGAAGTGGAC
CCATTATTGGAAGGCCAATATTTGAAGGAGACTTTGAAAATCTATGGAATGAAGGTGCCGAGGAAGAAAATAGAGAAGTC
TCAGAGTATGAGCTTATCCTAGCCTCAATTAAGGGAGAACTCAAGGGCTATGCCGGGGCTCTAGTTAGGACTCTCAGAAT
CCTAAAGCAGAAAGTGGAGGGAGCAGTTCCTGTAAATCCTGCGGGAAGCATAAGGAGAGAGCTCGAGATAATTTTAGAGG
ACACTCCTGATGTGGAAGTATTAAAGAAAATCGTTAATAGGAACGTTCCAAATCCGTTCCGCTTGGTGAGAGGACTTTTA
AGAGAAGCCGAGGGGATTGAGGGAATTAGAGTATTAGTTAAGGGCTATGATGGCTCTATGGATGTGTACTATGCCATATT
CTACGACGAAGATGGGAGAGAAATTTATAGATATCCAATTCTTGCTGAGAACGGAAAGTACCTTGTTGGATTCAACTTAC
TCAAGAGGATTAGTGAGGTACTATCCAAAGAGTACAAGGTCGTTAGAGGGGCAAGTGAAGAGGTGGACTATAAAGTTAAG
ACGCTAGTTATGGACAACATATACAATTTAATCGTGAAGAAGTATCTGGAATACGATAGCTTAAACATCAAAGAAGGTAA
AATCTTCAAGAGGCTTAAGGTTGAAATAAAGAAAGCCCTCGAGGTAAAGGGGATAAGTGAAGAAGAATTCGAAGTCATCA
AGAGAGTTCCCCCTGAGATTATGGAAGTTCTAGGGTTAGATTCCACAAAAATAGAACTACCTACCAACGAATACCTCAAG
ATCTTCGAAAGGAACTTTGTTCCTCTGGATAAAATCCTTGAGAGTGAAAAGAAGGCCATGGAAATAGTCATGGAGCTAGA
GAAGAGCAGAGGATATAACGTTGAGGACGTATCTTTAAGGGAGCACTATGACATAAGGGCCTTTACAGATGGTGAAGAGA
AGTACATAGAGGTCAAAGGCCACTATCCAATGCTCCTACTTGCGGAGTTAACGGAAAAGGAATTTGAGTTCGCACAAAAA
AATGAAGATAAGTACTGGATATACATAGTCTCGAACATTGCCAAAGACCCCGTAATTGTAAAAATTTACAAACCATTTTC
CCAGGATAGAAGAGTATTCGTGGTTAAGAATGGGGAAGATGTTGAGGTTAATATCAACATTGAGATAAAGAAGAAAGATA
GGCATTTACTTAAGTTAAGCTAG

Upstream 100 bases:

>100_bases
TAAGGTATTGGGCCTCGAAGTTCAGAAACGCCTATTGGAAGTACAAGAACATGAGAAAGCTTATGTTCCTAGCAAGAAGG
TTTATGGAGGTTGAAATGAT

Downstream 100 bases:

>100_bases
GCGATGATGTAGATTAGCCCCGACTGAGCGGTGATGAAGCTGGCCCATCGCTGAGTCTTTAAGATATCACTTTACTCTCT
CTATACATCTGCTTTTTCTT

Product: ATP-dependent RNA helicase hepa, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 940; Mature: 940

Protein sequence:

>940_residues
MKGLFRDVILHNPHLFVYSYSDKGIIPFKHQFQTLYHAMLMRPVRLMIADEIGLGKTIQALLIAKYLDFRGEIEKALIVV
PKVLREQWREEVKRILEEAPEVIENGSEIEWKLKRPRKYFIISIDLAKRYTEEILRQKWDLVIVDEVHNATLGTQRYEFL
KELTKNKDLNVIFLSATPHRGNNRDYLARLRLLDPTIPEEISPMHERKIYMKSRGTLVLRRTKKVVNELEGEVFKKCHFG
AVVVEVSREEREFFEELNRALFELIKDQADYSPLTLLAVIIRKRASSSYEAALKTLTRIVESAYISGQERARGVESYIEK
IFRMGYEELEIEEFNEIDDAIHKIIDEYRGFLTEEQLERLRRVLELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEF
RDTLEYVLERLPDILRRKHGIVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLHVASVVINYEAPWS
PIKLEQRVGRIWRLNQTRETKAYTIFLATETDLDVLNNLYRKIMNIKEAVGSGPIIGRPIFEGDFENLWNEGAEEENREV
SEYELILASIKGELKGYAGALVRTLRILKQKVEGAVPVNPAGSIRRELEIILEDTPDVEVLKKIVNRNVPNPFRLVRGLL
REAEGIEGIRVLVKGYDGSMDVYYAIFYDEDGREIYRYPILAENGKYLVGFNLLKRISEVLSKEYKVVRGASEEVDYKVK
TLVMDNIYNLIVKKYLEYDSLNIKEGKIFKRLKVEIKKALEVKGISEEEFEVIKRVPPEIMEVLGLDSTKIELPTNEYLK
IFERNFVPLDKILESEKKAMEIVMELEKSRGYNVEDVSLREHYDIRAFTDGEEKYIEVKGHYPMLLLAELTEKEFEFAQK
NEDKYWIYIVSNIAKDPVIVKIYKPFSQDRRVFVVKNGEDVEVNINIEIKKKDRHLLKLS

Sequences:

>Translated_940_residues
MKGLFRDVILHNPHLFVYSYSDKGIIPFKHQFQTLYHAMLMRPVRLMIADEIGLGKTIQALLIAKYLDFRGEIEKALIVV
PKVLREQWREEVKRILEEAPEVIENGSEIEWKLKRPRKYFIISIDLAKRYTEEILRQKWDLVIVDEVHNATLGTQRYEFL
KELTKNKDLNVIFLSATPHRGNNRDYLARLRLLDPTIPEEISPMHERKIYMKSRGTLVLRRTKKVVNELEGEVFKKCHFG
AVVVEVSREEREFFEELNRALFELIKDQADYSPLTLLAVIIRKRASSSYEAALKTLTRIVESAYISGQERARGVESYIEK
IFRMGYEELEIEEFNEIDDAIHKIIDEYRGFLTEEQLERLRRVLELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEF
RDTLEYVLERLPDILRRKHGIVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLHVASVVINYEAPWS
PIKLEQRVGRIWRLNQTRETKAYTIFLATETDLDVLNNLYRKIMNIKEAVGSGPIIGRPIFEGDFENLWNEGAEEENREV
SEYELILASIKGELKGYAGALVRTLRILKQKVEGAVPVNPAGSIRRELEIILEDTPDVEVLKKIVNRNVPNPFRLVRGLL
REAEGIEGIRVLVKGYDGSMDVYYAIFYDEDGREIYRYPILAENGKYLVGFNLLKRISEVLSKEYKVVRGASEEVDYKVK
TLVMDNIYNLIVKKYLEYDSLNIKEGKIFKRLKVEIKKALEVKGISEEEFEVIKRVPPEIMEVLGLDSTKIELPTNEYLK
IFERNFVPLDKILESEKKAMEIVMELEKSRGYNVEDVSLREHYDIRAFTDGEEKYIEVKGHYPMLLLAELTEKEFEFAQK
NEDKYWIYIVSNIAKDPVIVKIYKPFSQDRRVFVVKNGEDVEVNINIEIKKKDRHLLKLS
>Mature_940_residues
MKGLFRDVILHNPHLFVYSYSDKGIIPFKHQFQTLYHAMLMRPVRLMIADEIGLGKTIQALLIAKYLDFRGEIEKALIVV
PKVLREQWREEVKRILEEAPEVIENGSEIEWKLKRPRKYFIISIDLAKRYTEEILRQKWDLVIVDEVHNATLGTQRYEFL
KELTKNKDLNVIFLSATPHRGNNRDYLARLRLLDPTIPEEISPMHERKIYMKSRGTLVLRRTKKVVNELEGEVFKKCHFG
AVVVEVSREEREFFEELNRALFELIKDQADYSPLTLLAVIIRKRASSSYEAALKTLTRIVESAYISGQERARGVESYIEK
IFRMGYEELEIEEFNEIDDAIHKIIDEYRGFLTEEQLERLRRVLELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEF
RDTLEYVLERLPDILRRKHGIVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLHVASVVINYEAPWS
PIKLEQRVGRIWRLNQTRETKAYTIFLATETDLDVLNNLYRKIMNIKEAVGSGPIIGRPIFEGDFENLWNEGAEEENREV
SEYELILASIKGELKGYAGALVRTLRILKQKVEGAVPVNPAGSIRRELEIILEDTPDVEVLKKIVNRNVPNPFRLVRGLL
REAEGIEGIRVLVKGYDGSMDVYYAIFYDEDGREIYRYPILAENGKYLVGFNLLKRISEVLSKEYKVVRGASEEVDYKVK
TLVMDNIYNLIVKKYLEYDSLNIKEGKIFKRLKVEIKKALEVKGISEEEFEVIKRVPPEIMEVLGLDSTKIELPTNEYLK
IFERNFVPLDKILESEKKAMEIVMELEKSRGYNVEDVSLREHYDIRAFTDGEEKYIEVKGHYPMLLLAELTEKEFEFAQK
NEDKYWIYIVSNIAKDPVIVKIYKPFSQDRRVFVVKNGEDVEVNINIEIKKKDRHLLKLS

Specific function: Transcription Regulator That Activates Transcription By Stimulating RNA Polymerase (Rnap) Recycling In Case Of Stress Conditions Such As Supercoiled DNA Or High Salt Concentrations. Probably Acts By Releasing The Rnap, When It Is Trapped Or Immobilized On

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1786245, Length=566, Percent_Identity=23.1448763250883, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000330 [H]

Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 109705; Mature: 109705

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLFRDVILHNPHLFVYSYSDKGIIPFKHQFQTLYHAMLMRPVRLMIADEIGLGKTIQA
CCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LLIAKYLDFRGEIEKALIVVPKVLREQWREEVKRILEEAPEVIENGSEIEWKLKRPRKYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEECCCCEEE
IISIDLAKRYTEEILRQKWDLVIVDEVHNATLGTQRYEFLKELTKNKDLNVIFLSATPHR
EEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
GNNRDYLARLRLLDPTIPEEISPMHERKIYMKSRGTLVLRRTKKVVNELEGEVFKKCHFG
CCCHHHHHHHHHCCCCCCHHCCCHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHCCC
AVVVEVSREEREFFEELNRALFELIKDQADYSPLTLLAVIIRKRASSSYEAALKTLTRIV
EEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ESAYISGQERARGVESYIEKIFRMGYEELEIEEFNEIDDAIHKIIDEYRGFLTEEQLERL
HHHHCCCHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RRVLELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEFRDTLEYVLERLPDILRRKHG
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
IVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLHVASVVINYEAPWS
CEECCCCHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEEECCCCCC
PIKLEQRVGRIWRLNQTRETKAYTIFLATETDLDVLNNLYRKIMNIKEAVGSGPIIGRPI
CCHHHHHHHHHEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FEGDFENLWNEGAEEENREVSEYELILASIKGELKGYAGALVRTLRILKQKVEGAVPVNP
CCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGSIRRELEIILEDTPDVEVLKKIVNRNVPNPFRLVRGLLREAEGIEGIRVLVKGYDGSM
CHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCE
DVYYAIFYDEDGREIYRYPILAENGKYLVGFNLLKRISEVLSKEYKVVRGASEEVDYKVK
EEEEEEEEECCCCEEEEECEEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHCCHHHH
TLVMDNIYNLIVKKYLEYDSLNIKEGKIFKRLKVEIKKALEVKGISEEEFEVIKRVPPEI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
MEVLGLDSTKIELPTNEYLKIFERNFVPLDKILESEKKAMEIVMELEKSRGYNVEDVSLR
HHHHCCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
EHYDIRAFTDGEEKYIEVKGHYPMLLLAELTEKEFEFAQKNEDKYWIYIVSNIAKDPVIV
CCCCEEEEECCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEE
KIYKPFSQDRRVFVVKNGEDVEVNINIEIKKKDRHLLKLS
EEECCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCEECC
>Mature Secondary Structure
MKGLFRDVILHNPHLFVYSYSDKGIIPFKHQFQTLYHAMLMRPVRLMIADEIGLGKTIQA
CCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LLIAKYLDFRGEIEKALIVVPKVLREQWREEVKRILEEAPEVIENGSEIEWKLKRPRKYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEECCCCEEE
IISIDLAKRYTEEILRQKWDLVIVDEVHNATLGTQRYEFLKELTKNKDLNVIFLSATPHR
EEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
GNNRDYLARLRLLDPTIPEEISPMHERKIYMKSRGTLVLRRTKKVVNELEGEVFKKCHFG
CCCHHHHHHHHHCCCCCCHHCCCHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHCCC
AVVVEVSREEREFFEELNRALFELIKDQADYSPLTLLAVIIRKRASSSYEAALKTLTRIV
EEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ESAYISGQERARGVESYIEKIFRMGYEELEIEEFNEIDDAIHKIIDEYRGFLTEEQLERL
HHHHCCCHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RRVLELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEFRDTLEYVLERLPDILRRKHG
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
IVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLHVASVVINYEAPWS
CEECCCCHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEEECCCCCC
PIKLEQRVGRIWRLNQTRETKAYTIFLATETDLDVLNNLYRKIMNIKEAVGSGPIIGRPI
CCHHHHHHHHHEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FEGDFENLWNEGAEEENREVSEYELILASIKGELKGYAGALVRTLRILKQKVEGAVPVNP
CCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGSIRRELEIILEDTPDVEVLKKIVNRNVPNPFRLVRGLLREAEGIEGIRVLVKGYDGSM
CHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCE
DVYYAIFYDEDGREIYRYPILAENGKYLVGFNLLKRISEVLSKEYKVVRGASEEVDYKVK
EEEEEEEEECCCCEEEEECEEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHCCHHHH
TLVMDNIYNLIVKKYLEYDSLNIKEGKIFKRLKVEIKKALEVKGISEEEFEVIKRVPPEI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
MEVLGLDSTKIELPTNEYLKIFERNFVPLDKILESEKKAMEIVMELEKSRGYNVEDVSLR
HHHHCCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
EHYDIRAFTDGEEKYIEVKGHYPMLLLAELTEKEFEFAQKNEDKYWIYIVSNIAKDPVIV
CCCCEEEEECCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEE
KIYKPFSQDRRVFVVKNGEDVEVNINIEIKKKDRHLLKLS
EEECCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]