Click here to switch to the map view.

The map label for this gene is yjbQ [C]

Identifier: 18976916

GI number: 18976916

Start: 562896

End: 563297

Strand: Reverse

Name: yjbQ [C]

Synonym: PF0544

Alternate gene names: 18976916

Gene position: 563297-562896 (Counterclockwise)

Preceding gene: 18976917

Following gene: 18976910

Centisome position: 29.52

GC content: 37.81

Gene sequence:

>402_bases
ATGATTGAAACCATCACTATAAGGACTTCCAAAGAAGTTGAAATAATAGATATAACGGAAAAAGTCCAGGAAATCGTTAG
AAAAAGTGGCATCGATAATGGAATTGCCGTTGTCTATACTAGGCATACCACCACAGGAATAATAGTAAATGAGAACGAGC
CAAGGCTCCTTAACGACATAGAAAATATTCTCTCAAAATTAATTCCCAAAGGTGCAGGATACAGACACGATTCTATAGAT
AACAACGCCCACTCTCACCTCAGAGCTATAATACTTGGCCCAAGCGTGACTATTCCAATAGTAAATGGCCAACTTATGTT
AGGAACTTGGCAGAGCATTCTCTTTGTAGAGTTAGATGGACCCAGGAGAAGAGAAGTTTATGTAAAAGTATGTAAATGTT
AA

Upstream 100 bases:

>100_bases
ACTGTTAGGGCCACGTTAAAAAACATTAATGAAGAAGAGGCAAATAAGCATATAGAAAACGCTAGGGAGATGATAAAAAG
GTATCTAGAGGGGAAGAAAT

Downstream 100 bases:

>100_bases
CCTCCGCTTACGGGAGGAAATACTCCAACAACATCCCCATCCTTTAACTCTTCATCCCAGCTTACATACCTTCCATTTAC
GGCAATGTTAACATCGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIETITIRTSKEVEIIDITEKVQEIVRKSGIDNGIAVVYTRHTTTGIIVNENEPRLLNDIENILSKLIPKGAGYRHDSID
NNAHSHLRAIILGPSVTIPIVNGQLMLGTWQSILFVELDGPRRREVYVKVCKC

Sequences:

>Translated_133_residues
MIETITIRTSKEVEIIDITEKVQEIVRKSGIDNGIAVVYTRHTTTGIIVNENEPRLLNDIENILSKLIPKGAGYRHDSID
NNAHSHLRAIILGPSVTIPIVNGQLMLGTWQSILFVELDGPRRREVYVKVCKC
>Mature_133_residues
MIETITIRTSKEVEIIDITEKVQEIVRKSGIDNGIAVVYTRHTTTGIIVNENEPRLLNDIENILSKLIPKGAGYRHDSID
NNAHSHLRAIILGPSVTIPIVNGQLMLGTWQSILFVELDGPRRREVYVKVCKC

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Drosophila melanogaster, GI221476589, Length=118, Percent_Identity=32.2033898305085, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221476594, Length=118, Percent_Identity=32.2033898305085, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 14929; Mature: 14929

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETITIRTSKEVEIIDITEKVQEIVRKSGIDNGIAVVYTRHTTTGIIVNENEPRLLNDI
CCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEECCCCHHHHHH
ENILSKLIPKGAGYRHDSIDNNAHSHLRAIILGPSVTIPIVNGQLMLGTWQSILFVELDG
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEECCEEEEEECCC
PRRREVYVKVCKC
CCCEEEEEEEECC
>Mature Secondary Structure
MIETITIRTSKEVEIIDITEKVQEIVRKSGIDNGIAVVYTRHTTTGIIVNENEPRLLNDI
CCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEECCCCHHHHHH
ENILSKLIPKGAGYRHDSIDNNAHSHLRAIILGPSVTIPIVNGQLMLGTWQSILFVELDG
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEECCEEEEEECCC
PRRREVYVKVCKC
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]