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The map label for this gene is 18976884

Identifier: 18976884

GI number: 18976884

Start: 531918

End: 532442

Strand: Direct

Name: 18976884

Synonym: PF0512

Alternate gene names: NA

Gene position: 531918-532442 (Clockwise)

Preceding gene: 18976879

Following gene: 18976887

Centisome position: 27.87

GC content: 44.0

Gene sequence:

>525_bases
ATGGCAAAGGCTAAGCCCAGGTATTGTGAGCTTTGTGGAAGGGAAATAACAGGTCAAGGACATGTGGTTAGGATTGAGGG
GGCTGAGCTTTTAGTTTGTGACGACTGCTATAGGAAGTACGGAAGAAAGCCTGGGACATTTAGTATTATGCCTCGGAGAG
AACCTACAAGGATTACAACTTCTACACCCAGGAAAAGGATGTCCCCTCCAAGAGAGAGGCCCCTAATAACCGAGGACATT
GTGGAGGATTATGCTGAGATTGTTTCTGAAGCAATAAGGAAAAGTGGACTGAGCTATGAGGAACTCTCCCATAAGGTTGG
GCTCTCTGTTAATGTACTGAGGAGGATTGCCCACGGGGAATACACTCCAACTATAGAAGAGGCAAGAAAGCTGGAGAAGT
TCTTTAAGATAAAGTTAATTGAAAGAGTTGAGCCTCAATTCGAAGAAAAACCGAGAATACCAAAGGACTACGAGCCTACA
CTGGGAGATATTGCAAGAATAAAGGTAAAGAAGAGGAAGAAGTAA

Upstream 100 bases:

>100_bases
TTCATCATCTCTCAGAGCAGTTCGCTTTCTTCATCGCGCATCTTATTAATGACCATATTATTTTTTAACATTGCTGACAA
GTAGGGTATGGGGAAAAGTA

Downstream 100 bases:

>100_bases
CTAGTGCCAAGTGACTACCTTTCTCTCCACTTTTCCTGCAAGGGCGTCTTTAATTGCCCTCTCCATTATTTCTAACCCCT
TCTCTGCTATCTCCTGGGTA

Product: transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAKAKPRYCELCGREITGQGHVVRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRITTSTPRKRMSPPRERPLITEDI
VEDYAEIVSEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEEARKLEKFFKIKLIERVEPQFEEKPRIPKDYEPT
LGDIARIKVKKRKK

Sequences:

>Translated_174_residues
MAKAKPRYCELCGREITGQGHVVRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRITTSTPRKRMSPPRERPLITEDI
VEDYAEIVSEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEEARKLEKFFKIKLIERVEPQFEEKPRIPKDYEPT
LGDIARIKVKKRKK
>Mature_173_residues
AKAKPRYCELCGREITGQGHVVRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRITTSTPRKRMSPPRERPLITEDIV
EDYAEIVSEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEEARKLEKFFKIKLIERVEPQFEEKPRIPKDYEPTL
GDIARIKVKKRKK

Specific function: Unknown

COG id: COG1813

COG function: function code K; Predicted transcription factor, homolog of eukaryotic MBF1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004451
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20213; Mature: 20082

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKPRYCELCGREITGQGHVVRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRITT
CCCCCCHHHHHCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCCEEECCCCCCCCCCC
STPRKRMSPPRERPLITEDIVEDYAEIVSEAIRKSGLSYEELSHKVGLSVNVLRRIAHGE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCC
YTPTIEEARKLEKFFKIKLIERVEPQFEEKPRIPKDYEPTLGDIARIKVKKRKK
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKAKPRYCELCGREITGQGHVVRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRITT
CCCCCHHHHHCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCCEEECCCCCCCCCCC
STPRKRMSPPRERPLITEDIVEDYAEIVSEAIRKSGLSYEELSHKVGLSVNVLRRIAHGE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCC
YTPTIEEARKLEKFFKIKLIERVEPQFEEKPRIPKDYEPTLGDIARIKVKKRKK
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]