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The map label for this gene is rps6e [H]

Identifier: 18976860

GI number: 18976860

Start: 505347

End: 505724

Strand: Direct

Name: rps6e [H]

Synonym: PF0488

Alternate gene names: 18976860

Gene position: 505347-505724 (Clockwise)

Preceding gene: 18976858

Following gene: 18976861

Centisome position: 26.48

GC content: 41.27

Gene sequence:

>378_bases
ATGGCGACTTTCAAGCTTGTTATATCCGATCCTAAGAGTGGGATAGCAAAGCAGGTGGAAATTACAGGAGCAGAGACGGA
AAAACTCATTGGAAAGAGAATAGGTGATCAGATCCCAGCAAAAGAGCTAAACATAAACTTAAACGAACTGTTTGGAAAAG
AATTCCCAGAGGACGTGAAGTTAGAGATAAGAGGAGGAACAGACAAAGATGGATTCCCAATGAGGCCTGACATTCATGGT
CCTAGAAGGGTAAGAGTTCTACTCTCCAAAGGGCCAGGATTTAGACCTAAGGAAAAGGGAGAAAGAAGAAAGAAAACTGT
GAGAGGGAACACTATTAGCCCCGAAATAGTTCAAGTAAATGTAAAGCTTGTATATTGA

Upstream 100 bases:

>100_bases
TACCCCACCTAAAAGTGCCAAGTGATGGGTTTGAGAGATCCGCCGTTGGGCGGAAGCTCGATGAATCCCGCTGATGAACA
TTCCCAGGAGGTGGGAGGAA

Downstream 100 bases:

>100_bases
ATAAAATTTTTAAACTGCTTTTCTATATTTTTCTTGCGCGGCTCAGACCGGCAGATGCCGTAGCAATGGGGCCGCGCTGG
ACCGGGCTACGTAGAGGTGT

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHG
PRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY

Sequences:

>Translated_125_residues
MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHG
PRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY
>Mature_124_residues
ATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHGP
RRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6325167, Length=123, Percent_Identity=34.9593495934959, Blast_Score=62, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319658, Length=123, Percent_Identity=34.9593495934959, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282 [H]

Pfam domain/function: PF01092 Ribosomal_S6e [H]

EC number: NA

Molecular weight: Translated: 13977; Mature: 13845

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVK
CCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHCCCCHHHHHCCCCCCCEE
LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
EEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
VKLVY
EEEEC
>Mature Secondary Structure 
ATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVK
CEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHCCCCHHHHHCCCCCCCEE
LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
EEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
VKLVY
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]