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The map label for this gene is sohB [C]

Identifier: 18976612

GI number: 18976612

Start: 250877

End: 251719

Strand: Direct

Name: sohB [C]

Synonym: PF0240

Alternate gene names: 18976612

Gene position: 250877-251719 (Clockwise)

Preceding gene: 18976605

Following gene: 18976618

Centisome position: 13.15

GC content: 44.72

Gene sequence:

>843_bases
ATGGATCCCCTGAGTGGATTTGTGGGATCATTGATATGGTGGATATTGTTTTTCTATTTGCTCATGGGGCCACAGCTCCA
ATACAGACAGCTGCAAATTGCTAGGGCAAAATTACTGGAAAAAATGGCAAGGAAGAGAAATTCCACTGTAATTACAATGA
TCCATAGGCAAGAAAGCATTGGATTCTTTGGGATTCCAGTTTACAAGTTCATAAGCATTGAAGACAGTGAAGAGGTACTC
AGGGCAATAAGAATGGCTCCAAAAGATAAGCCAATCGACTTGATAATCCACACTCCTGGTGGGTTGGTATTGGCAGCAAC
ACAAATAGCCAAAGCTTTGAAGGATCACCCGGCTGAAACAAGGGTGATAGTTCCCCACTACGCGATGAGCGGTGGGACTT
TGATAGCTCTTGCAGCGGACAAGATTATAATGGATCCTCATGCAGTTTTGGGACCAGTTGATCCTCAGCTGGGTCAGTAT
CCCGCCCCTAGTATAATAAAAGCTGTTGAACAGAAGGGAGCGGAGAAAGTCGATGATCAGACGCTAATACTTGCGGACGT
TGCAAAGAAGGCCATAAAACAGGTGCAGGATTTCTTGTATGATCTTCTAAAGGATAAGTACGGTGAGGAAAAAGCAAGAG
AGCTGGCCCAGATCTTAACAGAAGGAAGGTGGACGCATGACTACCCAATAACGGTTGAACATGCCAGAGAGCTTGGTCTT
GAGGTAGATACAAATGTTCCTGAGGAGGTTTACGCCTTAATGGAACTCTACAAACAGCCCGTTAGGCAGAGAGGAACAGT
AGAATTCATGCCATACCCAGTAAAGCAAGAAGGGAAGAAATGA

Upstream 100 bases:

>100_bases
GGTTTGCCCCAGTTATCCCGACAGTATGTTTTATTCCTCCAAAAGTGTTAAATAAGTTTGTAATTTATTCTTGGCTTGAA
AAGTCATATAAGGTGATTGT

Downstream 100 bases:

>100_bases
TCAATAAAAAACTCCAGTTTTTAGTGTTTCTTTTACTTAGTTATGAAAAAAGTGAAGAAAACAAGAATTCACTTCTTTAA
AGGATCTGGTATGGCCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDPLSGFVGSLIWWILFFYLLMGPQLQYRQLQIARAKLLEKMARKRNSTVITMIHRQESIGFFGIPVYKFISIEDSEEVL
RAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQY
PAPSIIKAVEQKGAEKVDDQTLILADVAKKAIKQVQDFLYDLLKDKYGEEKARELAQILTEGRWTHDYPITVEHARELGL
EVDTNVPEEVYALMELYKQPVRQRGTVEFMPYPVKQEGKK

Sequences:

>Translated_280_residues
MDPLSGFVGSLIWWILFFYLLMGPQLQYRQLQIARAKLLEKMARKRNSTVITMIHRQESIGFFGIPVYKFISIEDSEEVL
RAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQY
PAPSIIKAVEQKGAEKVDDQTLILADVAKKAIKQVQDFLYDLLKDKYGEEKARELAQILTEGRWTHDYPITVEHARELGL
EVDTNVPEEVYALMELYKQPVRQRGTVEFMPYPVKQEGKK
>Mature_280_residues
MDPLSGFVGSLIWWILFFYLLMGPQLQYRQLQIARAKLLEKMARKRNSTVITMIHRQESIGFFGIPVYKFISIEDSEEVL
RAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQY
PAPSIIKAVEQKGAEKVDDQTLILADVAKKAIKQVQDFLYDLLKDKYGEEKARELAQILTEGRWTHDYPITVEHARELGL
EVDTNVPEEVYALMELYKQPVRQRGTVEFMPYPVKQEGKK

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1495 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114 [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 31627; Mature: 31627

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLSGFVGSLIWWILFFYLLMGPQLQYRQLQIARAKLLEKMARKRNSTVITMIHRQESI
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
GFFGIPVYKFISIEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET
CEECCCHHEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKGAEKVDDQ
EEEECCEECCCCEEEEEECCHHEECCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCC
TLILADVAKKAIKQVQDFLYDLLKDKYGEEKARELAQILTEGRWTHDYPITVEHARELGL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHCCC
EVDTNVPEEVYALMELYKQPVRQRGTVEFMPYPVKQEGKK
CCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MDPLSGFVGSLIWWILFFYLLMGPQLQYRQLQIARAKLLEKMARKRNSTVITMIHRQESI
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
GFFGIPVYKFISIEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET
CEECCCHHEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKGAEKVDDQ
EEEECCEECCCCEEEEEECCHHEECCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCC
TLILADVAKKAIKQVQDFLYDLLKDKYGEEKARELAQILTEGRWTHDYPITVEHARELGL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHCCC
EVDTNVPEEVYALMELYKQPVRQRGTVEFMPYPVKQEGKK
CCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]